Browse Element(s) Details


Os.28192.1.S1_at

Description gb:CB629004
DB_XREF= gi:29623993
DB_XREF=OSIIEb04O16.r
CLONE=OSIIEb04O16
TID=Os.28192.1
CNT=95
FEA=FLmRNA
TIER=Stack
STK=8
UG=Os.28192 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000F01, full insert sequence
FL= gb:AK064822.1 gb:AK059703.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4285010/11amino acid permease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42810Os.24397.1.S1_at9/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42810OsAffx.30686.1.S1_x_at4/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42810OsAffx.30686.1.S1_at1/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42820OsAffx.32163.2.S1_at11/1112+26575887..26577989hypothetical protein
LOC_Os12g42820OsAffx.32163.2.S1_x_at11/1112+26575887..26577989hypothetical protein
LOC_Os12g42830OsAffx.32163.1.S1_at10/1112+26580135..26583625hypothetical protein
LOC_Os12g42830OsAffx.32163.2.S1_x_at4/1112+26580135..26583625hypothetical protein
LOC_Os12g42840OsAffx.20093.1.S1_at10/1112+26584635..26587248expressed protein
LOC_Os12g42850Os.28192.1.S1_at10/1112+26587604..26592491amino acid permease family protein, putative, expressed
LOC_Os12g42860Os.8576.1.S1_at11/1112+26596321..26599020expressed protein
LOC_Os12g42870Os.51822.1.S1_at11/1112+26602092..26606936dihydrofolate synthetase/folylpolyglutamate synthetase, putative, expressed
LOC_Os12g42884Os.12374.2.S1_x_at11/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.12374.1.S1_a_at11/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.12374.1.S1_at7/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884OsAffx.29729.1.S1_at1/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.55372.1.S1_at1/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015326molecular_functioncationic amino acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28192.1.S1_at--274--3871Chr12:26588515..26588539 (25 bp)
CTGTGTTTTTGGTGGCCTACTCCTC
LOC_Os12g42850
Os.28192.1.S1_at--53--7471Chr12:26588477..26588501 (25 bp)
GTGTCCTCTGCTATATCGACCAAGA
LOC_Os12g42850
Os.28192.1.S1_at--959--6191Chr12:26588446..26588470 (25 bp)
GAGGCACTCATTTGGTCACTCTGGA
LOC_Os12g42850
Os.28192.1.S1_at--1069--8551NONE
TGGAGGATTCATCTGCCCCTTCGTT
NONE
Os.28192.1.S1_at--793--10791Chr12:26588299..26588323 (25 bp)
TTGTTGCCGGTGATGTGCATCCTCG
LOC_Os12g42850
Os.28192.1.S1_at--1111--7311Chr12:26588285..26588309 (25 bp)
GTGCATCCTCGTGAACACATACTTG
LOC_Os12g42850
Os.28192.1.S1_at--626--2151Chr12:26588076..26588100 (25 bp)
ACAGCTCATTGACCGACGTGGTGTA
LOC_Os12g42850
Os.28192.1.S1_at--723--3551Chr12:26588013..26588037 (25 bp)
CATCTTCATCAGGATTTGTGGCCTA
LOC_Os12g42850
Os.28192.1.S1_at--140--5051Chr12:26587980..26588004 (25 bp)
GCAGAGTACCAAAGCCTTGAGTGAT
LOC_Os12g42850
Os.28192.1.S1_at--195--2191Chr12:26587921..26587945 (25 bp)
ACAAACCTGGCTGAAAGGGACTCCT
LOC_Os12g42850
Os.28192.1.S1_at--984--4631Chr12:26587890..26587914 (25 bp)
GCGTTCTGTATTGCATGCCAGGCAT
LOC_Os12g42850
Target Sequence 
CTGTGTTTTTGGTGGCCTACTCCTCCTAGCCGGTCTCGGTGTCCTCTGCTATATCGACCAAGATGANGGGAGGCACTCAT
TTGGTCACTCTGGAGGATTCATCTGCCCCTTCGTTCCGTTGTTGCCGGTGATGTGCATCCTCGTGAACACATACTTGTTA
GTAAACTTGGGTGGAGGGACATGGATGAGAGTTGGGGTATGGCTGGTNATGGGAGTATTNGTGTACATTTTCTANGGCCG
GACCCACAGCTCATTGACCGACGTGGTGTATGTTCCGGTGGCGCAAGCGGAAGAGATATANGGTTCNTCATCTTCATCAG
GATTTGTGGCCTAGGNAAGGAGCAGAGTACCAAAGCCTTGAGTGATGAAATGCTCCAAAATCAATTTTACCACACTTTGA
ACAAACCTGGCTGAAAGGGACTCCTGCTGCTGCGTTCTGTATTGCATGCCAGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis