Browse Element(s) Details

Os.28394.2.S1_x_at

Description

gb:AK059029.1
DB_XREF= gi:32969047
TID=Os.28394.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-C01, full insert sequence.
FL= gb:AK059029.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g41990	10/11	metalloendopeptidase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g41950	OsAffx.28055.1.S1_at	11/11	6	+	25172498..25176364	hypothetical protein
LOC_Os06g41950	Os.52401.1.S1_at	1/11	6	+	25172498..25176364	hypothetical protein
LOC_Os06g41960	OsAffx.28056.1.S1_at	11/11	6	+	25182038..25183930	Protein kinase domain containing protein
LOC_Os06g41970	NA	NA	6	+	25186717..25189956	retrotransposon protein, putative, unclassified
LOC_Os06g41980	OsAffx.15885.1.S1_at	11/11	6	+	25197245..25199248	Protein kinase domain containing protein, expressed
LOC_Os06g41980	OsAffx.15885.1.S1_x_at	11/11	6	+	25197245..25199248	Protein kinase domain containing protein, expressed
LOC_Os06g41990	Os.28394.1.S1_s_at	11/11	6	+	25199281..25209594	metalloendopeptidase, putative, expressed
LOC_Os06g41990	Os.28394.2.S1_x_at	10/11	6	+	25199281..25209594	metalloendopeptidase, putative, expressed
LOC_Os06g42000	Os.9313.1.S1_at	11/11	6	+	25213055..25214303	AhpC/TSA family protein, expressed
LOC_Os06g42010	Os.35344.18.S1_x_at	11/11	6	+	25220588..25224481	Transposable element protein, putative, MuDR
LOC_Os06g42010	Os.35344.3.S1_x_at	9/11	6	+	25220588..25224481	Transposable element protein, putative, MuDR
LOC_Os06g42010	OsAffx.22940.5.S1_x_at	3/11	6	+	25220588..25224481	Transposable element protein, putative, MuDR
LOC_Os06g42020	Os.48268.1.S1_at	11/11	6	+	25230371..25234900	glycosyltransferase 5, putative, expressed
LOC_Os06g42020	OsAffx.5081.1.S1_x_at	11/11	6	+	25230371..25234900	glycosyltransferase 5, putative, expressed
LOC_Os06g42020	OsAffx.5081.1.S1_at	11/11	6	+	25230371..25234900	glycosyltransferase 5, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006508	biological_process	proteolysis
GO:0005739	cellular_component	mitochondrion
GO:0004222	molecular_function	metalloendopeptidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.28394.2.S1_x_at--543--69	1	Chr06:25204696..25204720 (25 bp)	ATGACCCGCTACATGGATGCACTGA	LOC_Os06g41990
Os.28394.2.S1_x_at--279--461	1	Chr06:25204662..25204686 (25 bp)	GCGAGCAACTGGCTATGATGATTGA	LOC_Os06g41990
Os.28394.2.S1_x_at--704--649	1	Chr06:25204639..25204663 (25 bp)	GATAGTGTTCCCTCAGTTGACAACT	LOC_Os06g41990
Os.28394.2.S1_x_at--23--563	1	Chr06:25204621..25204645 (25 bp)	GACAACTTGGACTTCATTATGGAGA	LOC_Os06g41990
Os.28394.2.S1_x_at--5--135	1	Chr06:25204599..25204623 (25 bp)	AGAGTGATGCACTTCGCCATACTGT	LOC_Os06g41990
Os.28394.2.S1_x_at--647--557	1	Chr06:25204552..25204576 (25 bp)	GAAAGTTTGCTTGCTGTTGCTGAAA	LOC_Os06g41990
Os.28394.2.S1_x_at--183--1071	1	Chr06:25204536..25204560 (25 bp)	TTGCTGAAACCGTCACCCTTGAGGA	LOC_Os06g41990
Os.28394.2.S1_x_at--754--181	1	Chr06:25204389..25204546 (25 bp)	ACCCTTGAGGAGGTCAACACTGTTG	LOC_Os06g41990
Os.28394.2.S1_x_at--427--1011	1	Chr06:25204335..25204359 (25 bp)	TATGGAAAGCCTGATGCACCGCTTC	LOC_Os06g41990
Os.28394.2.S1_x_at--1127--487	1	Chr06:25204305..25204329 (25 bp)	GCTATTGTGGCCTGTGTACCCAAAA	LOC_Os06g41990
Os.28394.2.S1_x_at--549--1039	1	NONE	TTTTGAGATACATCCTCGTATTAAT	NONE

Target Sequence

ATGACCCGCTACATGGATGCACTGATAAAAGATAGCGAGCAACTGGCTATGATGATTGATAGTGTTCCCTCAGTTGACAA
CTTGGACTTCATTATGGAGAGTGATGCACTTCGCCATACTGTTATGGATCAATTGCAGGGGCATGAAAGTTTGCTTGCTG
TTGCTGAAACCGTCACCCTTGAGGAGGTCAACACTGTTGGTGCAGAAGTTCTGGAATTTATTTCAGATTATGGAAAGCCT
GATGCACCGCTTCCTGCTGCTATTGTGGCCTGTGTACCCAAAAAGGTCCACATGGATGGAGTAGGTGAAACTGATTTTGA
GATACATCCTCGTATTAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis