Browse Element(s) Details


Os.28855.1.S1_at

Description gb:AK110980.1
DB_XREF= gi:32996189
TID=Os.28855.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28855 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-C08, full insert sequence.
FL= gb:AK110980.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1300011/11GTP-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12960OsAffx.3217.1.S1_at11/113+6983091..6983344hypothetical protein
LOC_Os03g12970OsAffx.25080.1.S1_at11/113+6986053..6986286hypothetical protein
LOC_Os03g12970OsAffx.1780.1.S1_x_at2/113+6986053..6986286hypothetical protein
LOC_Os03g12980OsAffx.12837.1.S1_at10/113+6988854..6989636hypothetical protein
LOC_Os03g12990Os.39075.1.S1_at11/113+6997456..6998414Phytosulfokine precursor protein containing protein, expressed
LOC_Os03g13000Os.28855.1.S1_at11/113+7001957..7005285GTP-binding protein, putative, expressed
LOC_Os03g13000Os.55138.1.S1_x_at1/113+7001957..7005285GTP-binding protein, putative, expressed
LOC_Os03g13010Os.8251.1.S1_at11/113+7008263..7010744U-box domain containing protein, expressed
LOC_Os03g13020Os.45967.1.A1_at1/113+7013512..7015658hypothetical protein
LOC_Os03g13030Os.50391.1.S1_at11/113+7022384..7025240Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g13030Os.50391.2.S1_at11/113+7022384..7025240Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g13040Os.53451.1.S1_at11/113+7026026..7030376Haemolysin-III related family protein, expressed
LOC_Os03g13040Os.23343.1.A1_at11/113+7026026..7030376Haemolysin-III related family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28855.1.S1_at--638--971Chr03:7004616..7004640 (25 bp)
AGGAGACGATCAGTTCCCTGTACCC
LOC_Os03g13000
Os.28855.1.S1_at--181--5871Chr03:7004642..7004666 (25 bp)
GAGCCTCCTCCATGGATCATGACGA
LOC_Os03g13000
Os.28855.1.S1_at--735--6951Chr03:7004667..7004691 (25 bp)
GTAGCGTTACTGGATTAGGCCGAGA
LOC_Os03g13000
Os.28855.1.S1_at--466--10751Chr03:7004801..7004825 (25 bp)
TTGACCCTTGCCGATATATCTTGAA
LOC_Os03g13000
Os.28855.1.S1_at--490--10471Chr03:7004826..7004850 (25 bp)
TTACATGAGCTTTTAGTCCAGTTCC
LOC_Os03g13000
Os.28855.1.S1_at--596--91Chr03:7004856..7004880 (25 bp)
ATTCTGTTGTATGACCCTTTGGTTT
LOC_Os03g13000
Os.28855.1.S1_at--209--7391Chr03:7004911..7004935 (25 bp)
GTGGAGCTTCTTGTAATTTCCCCTC
LOC_Os03g13000
Os.28855.1.S1_at--847--2071Chr03:7004955..7005066 (25 bp)
ACATTTAACAGGTTCTGCGGCGGCA
LOC_Os03g13000
Os.28855.1.S1_at--611--7331Chr03:7005182..7005206 (25 bp)
GTGCATTTCATACATTTCGTCGCCC
LOC_Os03g13000
Os.28855.1.S1_at--534--831Chr03:7005215..7005239 (25 bp)
AGACTGCCGGCCTGGATGGTTTTAC
LOC_Os03g13000
Os.28855.1.S1_at--1085--811Chr03:7005230..7005254 (25 bp)
ATGGTTTTACACTTCATGATGGCAG
LOC_Os03g13000
Target Sequence 
AGGAGACGATCAGTTCCCTGTACCCAGAGCCTCCTCCATGGATCATGACGAGTAGCGTTACTGGATTAGGCCGAGATGGG
CTGCTCCTCCACATGTNCGCAGTTGAGGAATTACTGGGACAATGAAGCAACCATGAGTCCATGATTTGCTTAGAAGAGGG
AAGAGGGAATTACAAACCACGAGTCCTTGACCCTTGCCGATATATCTTGAATTACATGAGCTTTTAGTCCAGTTCCTTCT
CATTCTGTTGTATGACCCTTTGGTTTATAGTGGGATACTAAGAGANGCTTTGCGATGTGGAGCTTCTTGTAATTTCCCCT
CCTCAGAGTCTCAGGTGTATACATTTAACAGGTTCTGCGGCGGCAGGGGGAGCGATCTGGAACTAGACAACAGTTATGGN
TGAAGGCAGCCTAGGAAATTCAAAGGACTGTAAGCATTCAATGGCACGAAACTTATTGCCAAAAATTCTACTACTAGTAC
TGTGCATTTCATACATTTCGTCGCCCGATCCGACAGACTGCCGGCCTGGATGGTTTTACACTTCATGATGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis