Browse Element(s) Details


Os.292.1.S1_a_at

Description gb:AB033536.1
DB_XREF= gi:11094191
GEN=OsRPT4
TID=Os.292.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.292 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRPT4 mRNA for 26S proteasome regulatory particle triple-A ATPase subunit4, complete cds.
PROD=26S proteasome regulatory particle triple-AATPase subunit4
FL= gb:AK099357.1 gb:AB033536.1 gb:AK104698.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1064011/1126S protease regulatory subunit S10B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10600OsAffx.11977.1.S1_at11/112+5573182..5578000F-box protein interaction domain containing protein, expressed
LOC_Os02g10600Os.28395.1.S1_x_at11/112+5573182..5578000F-box protein interaction domain containing protein, expressed
LOC_Os02g10614OsAffx.24188.1.S1_at11/112+5584279..5586144expressed protein
LOC_Os02g10614OsAffx.24188.1.S1_x_at11/112+5584279..5586144expressed protein
LOC_Os02g10630Os.16187.1.S1_at9/112+5586959..5593645C2 domain containing protein, expressed
LOC_Os02g10640Os.292.1.S1_a_at11/112+5595400..560085226S protease regulatory subunit S10B, putative, expressed
LOC_Os02g10650Os.18613.1.S1_at11/112+5604274..5609482polyphosphoinositide binding protein Ssh1p, putative, expressed
LOC_Os02g10660Os.26628.1.S1_at11/112+5611553..5614433Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g10670OsAffx.11978.1.S1_at11/112+5617300..5619951expressed protein
LOC_Os02g10670OsAffx.25435.1.S1_at1/112+5617300..5619951expressed protein
LOC_Os02g10670OsAffx.6133.1.S1_at1/112+5617300..5619951expressed protein
LOC_Os02g10680NANA2+5622522..5622924hypothetical protein
LOC_Os02g10690Os.9051.1.S1_at11/112+5623354..5627318Targeting protein for Xklp2 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.292.1.S1_a_at--152--8771Chr02:5596063..5596151 (25 bp)
TGTTAAACTGGCTGAGGGCTTCAAT
LOC_Os02g10640
Os.292.1.S1_a_at--749--5151Chr02:5596025..5596049 (25 bp)
GCAACGTCTGCACTGAAGCGGGTAT
LOC_Os02g10640
Os.292.1.S1_a_at--1002--7851Chr02:5596005..5596029 (25 bp)
GGTATGGCTGCAATTCGTGCTGAAC
LOC_Os02g10640
Os.292.1.S1_a_at--119--571Chr02:5595774..5595798 (25 bp)
ATCCTGTATTCGATCTTCTACCATG
LOC_Os02g10640
Os.292.1.S1_a_at--629--5531Chr02:5595714..5595738 (25 bp)
GAAATCGGTTTTTCACCGTCAGGCT
LOC_Os02g10640
Os.292.1.S1_a_at--182--1611Chr02:5595673..5595697 (25 bp)
AGCTGAAGCCATTTGTCATGTGTGC
LOC_Os02g10640
Os.292.1.S1_a_at--207--811Chr02:5595632..5595656 (25 bp)
ATGGTTGTCAAGCTTATCTCTGGGA
LOC_Os02g10640
Os.292.1.S1_a_at--61--2571Chr02:5595573..5595597 (25 bp)
AACTGATGCTTTTGCCTCTGTTTCA
LOC_Os02g10640
Os.292.1.S1_a_at--560--6831Chr02:5595554..5595578 (25 bp)
GTTTCACTCCGTTTTTTGAGTCTCA
LOC_Os02g10640
Os.292.1.S1_a_at--966--6091Chr02:5595537..5595561 (25 bp)
GAGTCTCACCTTGTGTCAGTACTAC
LOC_Os02g10640
Os.292.1.S1_a_at--101--751Chr02:5595485..5595509 (25 bp)
ATGTACTTTTGACACCATGCTTGGT
LOC_Os02g10640
Target Sequence 
TGTTAAACTGGCTGAGGGCTTCAATGGGGCTGATCTTCGCAACGTCTGCACTGAAGCGGGTATGGCTGCAATTCGTGCTG
AACGGGACTACGTTGTCCATGAGGACTTCATGAAGGCTGTCAGGAAGCTGAACGACGCCAAGAAGCTGGAATCCAGCGCC
CACTACAGTGCAGACTTCGGCAAAGAGTAAGGTGCAAGATTCTGATCCTGTATTCGATCTTCTACCATGCCGGGAGTTCT
CCGCCATGGTGCAAAAGCAACAGAGAAATCGGTTTTTCACCGTCAGGCTTCTATTCTGCACTGCAAGCTGAAGCCATTTG
TCATGTGTGCAATCAAAGAGCCATGAATGGTTGTCAAGCTTATCTCTGGGACTGGAGAAACATACCGAGAACTTGCAAAT
TTTATAACTGATGCTTTTGCCTCTGTTTCACTCCGTTTTTTGAGTCTCACCTTGTGTCAGTACTACTGTGTAGTCTTAGT
NTTGAGCAGTTGCATGTACTTTTGACACCATGCTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.292.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis