Browse Element(s) Details


Os.29745.1.S1_at

Description gb:AK109909.1
DB_XREF= gi:32995118
TID=Os.29745.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29745 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-G10, full insert sequence.
FL= gb:AK106370.1 gb:AK109909.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1256011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12510OsAffx.22431.1.S1_s_at11/117+7137873..7139079AP2 domain containing protein, expressed
LOC_Os07g12520Os.50233.1.S1_at11/117+7143853..7148040SWIM zinc finger family protein, putative, expressed
LOC_Os07g12530Os.26832.1.S1_at10/117+7151157..7156206ABC1 family protein, expressed
LOC_Os07g12540OsAffx.16228.1.S1_at11/117+7159169..7160548expressed protein
LOC_Os07g12550OsAffx.29680.1.S1_at8/117+7161453..7163595hypothetical protein
LOC_Os07g12560Os.29745.1.S2_at11/117+7163854..7166029F-box domain containing protein, expressed
LOC_Os07g12560Os.29745.1.S1_at11/117+7163854..7166029F-box domain containing protein, expressed
LOC_Os07g12570Os.52501.1.S1_x_at10/117+7166700..7169696expressed protein
LOC_Os07g12580OsAffx.28419.1.S1_at11/117+7180720..7181108hypothetical protein
LOC_Os07g12590Os.23876.1.S1_at11/117+7182309..7185281F-box domain containing protein, expressed
LOC_Os07g12590OsAffx.16229.1.S1_x_at1/117+7182309..7185281F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29745.1.S1_at--1112--10751Chr07:7165104..7165128 (25 bp)
TTGATGCGTATGATCCTACCACGGT
LOC_Os07g12560
Os.29745.1.S1_at--204--4451Chr07:7165068..7165092 (25 bp)
GCGTTAAACGCCTCCGGAAGCTGGT
LOC_Os07g12560
Os.29745.1.S1_at--958--131Chr07:7165037..7165061 (25 bp)
ATTACAGTGTATGGACTCTCTCGCT
LOC_Os07g12560
Os.29745.1.S1_at--347--9511Chr07:7165019..7165043 (25 bp)
TCTCGCTGCACTGATCACATGAATT
LOC_Os07g12560
Os.29745.1.S1_at--432--131Chr07:7164997..7165021 (25 bp)
ATTCAGTAATGCTCTTGCGGCGATT
LOC_Os07g12560
Os.29745.1.S1_at--46--1411Chr07:7164970..7164994 (25 bp)
AGACGGTATCCATTCTTCAGCTAGA
LOC_Os07g12560
Os.29745.1.S1_at--1026--5111Chr07:7164923..7164947 (25 bp)
GCACATTTTCCCTAAATCTGGCATG
LOC_Os07g12560
Os.29745.1.S1_at--646--351Chr07:7164808..7164832 (25 bp)
ATAAGTATTGACACAGCTGCCCTGG
LOC_Os07g12560
Os.29745.1.S1_at--682--5531Chr07:7164750..7164774 (25 bp)
GAAACAATTGCCCTTGGTGATGTGA
LOC_Os07g12560
Os.29745.1.S1_at--245--9491Chr07:7164700..7164724 (25 bp)
TCTGCTATCGCACTGGTACTGAACA
LOC_Os07g12560
Os.29745.1.S1_at--80--5331Chr07:7164594..7164618 (25 bp)
GAAGTGGGCTCAGTTTTGGTTCTAT
LOC_Os07g12560
Target Sequence 
TTGATGCGTATGATCCTACCACGGTCCAATTTGGCGGCGTTAAACGCCTCCGGAAGCTGGTTACCCAATTACAGTGTATG
GACTCTCTCGCTGCACTGATCACATGAATTCAGTAATGCTCTTGCGGCGATTTGAGACGGTATCCATTCTTCAGCTAGAA
CTTGACTATCCAGAGGTAACTGCACATTTTCCCTAAATCTGGCATGAATGTCATTGAATAAAACATAGAGATTGAAATAT
TTGTTTGGTAGACTCTAGTCATAGTGTGCATGGACTTCATTCAGATATATACCTTCATAAGTATTGACACAGCTGCCCTG
GTGAAATGTGTTAGATATTTATCTTTTATGTATTGAAACAATTGCCCTTGGTGATGTGAAAAATAGCATTTTGGNAGGTC
CTGGATCTGCTATCGCACTGGTACTGAACATATGAGATACTGAGGAACGGTATTGATCAACCAGATTTAGCCAAAGAAGA
CTAGAATTTGAGTAGTCTGTCCCACAAACAGGAAGTGGGCTCAGTTTTGGTTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis