Browse Element(s) Details

Os.30077.1.S1_at

Description

gb:AK109304.1
DB_XREF= gi:32994513
TID=Os.30077.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pfam00106, adh_short, short chain dehydrogenase (OJA1364E02.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-E03, full insert sequence.
FL= gb:AK109304.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g16210	11/11	Tropinone reductase homolog At1g07440, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g16160	OsAffx.25105.1.S1_at	11/11	3	+	8895670..8896206	hypothetical protein
LOC_Os03g16170	Os.35013.1.S1_at	11/11	3	+	8900444..8902490	Protein phosphatase 2C, putative, expressed
LOC_Os03g16170	Os.27906.1.S1_a_at	1/11	3	+	8900444..8902490	Protein phosphatase 2C, putative, expressed
LOC_Os03g16180	NA	NA	3	+	8904205..8905896	retrotransposon protein, putative, unclassified
LOC_Os03g16190	NA	NA	3	+	8906767..8907291	retrotransposon protein, putative, unclassified
LOC_Os03g16200	NA	NA	3	+	8910433..8910714	hypothetical protein
LOC_Os03g16210	Os.30077.1.S1_at	11/11	3	+	8917534..8920364	Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16210	Os.30077.2.S1_at	8/11	3	+	8917534..8920364	Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16210	Os.30077.3.S1_at	5/11	3	+	8917534..8920364	Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16220	OsAffx.3252.1.S1_at	11/11	3	+	8924117..8926965	Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16220	Os.16159.1.S1_at	10/11	3	+	8924117..8926965	Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16230	Os.34878.1.S1_a_at	11/11	3	+	8929080..8931135	Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16230	OsAffx.17694.1.S1_x_at	1/11	3	+	8929080..8931135	Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16250	Os.22646.1.S1_at	10/11	3	+	8939949..8942368	transposon protein, putative, unclassified
LOC_Os03g16250	Os.22646.1.S1_x_at	10/11	3	+	8939949..8942368	transposon protein, putative, unclassified
LOC_Os03g16250	OsAffx.21756.5.A1_x_at	3/11	3	+	8939949..8942368	transposon protein, putative, unclassified
LOC_Os03g16250	OsAffx.16205.1.S1_at	2/11	3	+	8939949..8942368	transposon protein, putative, unclassified
LOC_Os03g16250	Os.26442.1.S1_at	1/11	3	+	8939949..8942368	transposon protein, putative, unclassified
LOC_Os03g16250	Os.52979.1.S1_at	1/11	3	+	8939949..8942368	transposon protein, putative, unclassified
LOC_Os03g16260	Os.43946.1.S1_at	11/11	3	+	8943078..8945859	Protein kinase domain containing protein, expressed
LOC_Os03g16260	Os.43946.3.S1_x_at	10/11	3	+	8943078..8945859	Protein kinase domain containing protein, expressed
LOC_Os03g16260	OsAffx.25423.2.S1_x_at	6/11	3	+	8943078..8945859	Protein kinase domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0007568	biological_process	aging
GO:0004022	molecular_function	alcohol dehydrogenase activity
GO:0016491	molecular_function	oxidoreductase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.30077.1.S1_at--66--935	1	Chr03:8918696..8918720 (25 bp)	TCGCTTTCAGAAGGAGTAAGTGTCT	LOC_Os03g16210
Os.30077.1.S1_at--424--715	1	Chr03:8918675..8918699 (25 bp)	GTCTTCTTGTGTTAATTTACTAAGT	LOC_Os03g16210
Os.30077.1.S1_at--398--121	1	Chr03:8918653..8918677 (25 bp)	AGTTTCACTGTATTAATAAGTCGGA	LOC_Os03g16210
Os.30077.1.S1_at--697--115	1	Chr03:8918635..8918659 (25 bp)	AGTCGGAATATCATGTGGCTTCTAC	LOC_Os03g16210
Os.30077.1.S1_at--561--41	1	Chr03:8918626..8918650 (25 bp)	ATCATGTGGCTTCTACTATGATGAA	LOC_Os03g16210
Os.30077.1.S1_at--885--369	1	Chr03:8918611..8918635 (25 bp)	CTATGATGAAGTGTGCTGGTTGCTG	LOC_Os03g16210
Os.30077.1.S1_at--63--473	1	Chr03:8918597..8918621 (25 bp)	GCTGGTTGCTGCTAGGCTGCATTTG	LOC_Os03g16210
Os.30077.1.S1_at--350--91	1	Chr03:8918584..8918608 (25 bp)	AGGCTGCATTTGCTTCATGACTATC	LOC_Os03g16210
Os.30077.1.S1_at--925--905	1	Chr03:8918574..8918598 (25 bp)	TGCTTCATGACTATCCTTTATTCCC	LOC_Os03g16210
Os.30077.1.S1_at--1051--255	1	Chr03:8918543..8918567 (25 bp)	AACTGTTTAGATGTTGGTGCTTCAA	LOC_Os03g16210
Os.30077.1.S1_at--1049--1083	1	Chr03:8918530..8918554 (25 bp)	TTGGTGCTTCAAAGTGCCCTTTTTT	LOC_Os03g16210

Target Sequence

TCGCTTTCAGAAGGAGTAAGTGTCTTCTTGTGTTAATTTACTAAGTTTCACTGTATTAATAAGTCGGAATATCATGTGGC
TTCTACTATGATGAAGTGTGCTGGTTGCTGCTAGGCTGCATTTGCTTCATGACTATCCTTTATTCCCCCATATAACTGTT
TAGATGTTGGTGCTTCAAAGTGCCCTTTTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis