Browse Element(s) Details


Os.30077.2.S1_at

Description gb:AK099430.1
DB_XREF= gi:32984639
TID=Os.30077.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.30077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pfam00106, adh_short, short chain dehydrogenase (OJA1364E02.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013012E01, full insert sequence.
FL= gb:AK099430.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g162108/11Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os08g211241/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16160OsAffx.25105.1.S1_at11/113+8895670..8896206hypothetical protein
LOC_Os03g16170Os.35013.1.S1_at11/113+8900444..8902490Protein phosphatase 2C, putative, expressed
LOC_Os03g16170Os.27906.1.S1_a_at1/113+8900444..8902490Protein phosphatase 2C, putative, expressed
LOC_Os03g16180NANA3+8904205..8905896retrotransposon protein, putative, unclassified
LOC_Os03g16190NANA3+8906767..8907291retrotransposon protein, putative, unclassified
LOC_Os03g16200NANA3+8910433..8910714hypothetical protein
LOC_Os03g16210Os.30077.1.S1_at11/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16210Os.30077.2.S1_at8/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16210Os.30077.3.S1_at5/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16220OsAffx.3252.1.S1_at11/113+8924117..8926965Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16220Os.16159.1.S1_at10/113+8924117..8926965Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16230Os.34878.1.S1_a_at11/113+8929080..8931135Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16230OsAffx.17694.1.S1_x_at1/113+8929080..8931135Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16250Os.22646.1.S1_at10/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.22646.1.S1_x_at10/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250OsAffx.21756.5.A1_x_at3/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250OsAffx.16205.1.S1_at2/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.26442.1.S1_at1/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.52979.1.S1_at1/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16260Os.43946.1.S1_at11/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16260Os.43946.3.S1_x_at10/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16260OsAffx.25423.2.S1_x_at6/113+8943078..8945859Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30077.2.S1_at--632--10111Chr03:8917741..8917765 (25 bp)
TATGACTGTGAATGGGCTTTACCCC
LOC_Os03g16210
Os.30077.2.S1_at--668--4872Chr08:12620241..12620272 (25 bp)
GCTTTACCCCAGTTGAGGAGGGAGT
LOC_Os08g21124
Os.30077.2.S1_at--873--10711Chr03:8917683..8917707 (25 bp)
TTGCTGCCAGGAAACAGCGCGTCTG
LOC_Os03g16210
Os.30077.2.S1_at--1135--3371Chr03:8917669..8917693 (25 bp)
CAGCGCGTCTGATATTCGTGGAGTT
LOC_Os03g16210
Os.30077.2.S1_at--775--8651Chr03:8917609..8917633 (25 bp)
TGTGTGAAAGTGAGTCCATCATGGA
LOC_Os03g16210
Os.30077.2.S1_at--129--1151Chr03:8917597..8917621 (25 bp)
AGTCCATCATGGACGCGTGATATAT
LOC_Os03g16210
Os.30077.2.S1_at--983--3411Chr03:8917550..8917574 (25 bp)
CAGAACTATGTGATGGAGGCGTTGT
LOC_Os03g16210
Os.30077.2.S1_at--788--7991Chr03:8917536..8917560 (25 bp)
GGAGGCGTTGTTAGCTAGATATTGC
LOC_Os03g16210
Os.30077.2.S1_at--63--10711Chr03:8917515..8917539 (25 bp)
TTGCGCAAATACTTTGTGCCTCCGT
NONE
Os.30077.2.S1_at--237--10831Chr03:8917502..8917526 (25 bp)
TTGTGCCTCCGTCTTAATTACCTTT
NONE
Os.30077.2.S1_at--447--151Chr03:8917486..8917510 (25 bp)
ATTACCTTTCATCTGTGATTCAGTG
NONE
Target Sequence 
TATGACTGTGAATGGGCTTTACCCCAGTTGAGGAGGGAGTCATGGATGATGGATGTTCTTGCTGCCAGGAAACAGCGCGT
CTGATATTCGTGGAGTTGGTTGTTAGAAACTAAAGAAAAGGTGAAAAACACNTGTGTGAAAGTGAGTCCATCATGGACGC
GTGATATATNTTTCCATTGNACAAGCCNNTNCAGAACTATGTGATGGAGGCGTTGTTAGCTAGATATTGCGCAAATACTT
TGTGCCTCCGTCTTAATTACCTTTCATCTGTGATTCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30077.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis