Browse Element(s) Details

Os.30520.2.S1_at

Description

gb:NM_185228.1
DB_XREF= gi:34897541
GEN=OSJNBa0042L16.8
TID=Os.30520.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.30520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0042L16.8 (OSJNBa0042L16.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0042L16.8 (OSJNBa0042L16.8), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os04g35010	9/11	Helix-loop-helix DNA-binding domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os04g34984	Os.26731.1.S1_at	11/11	4	+	21068001..21081373	Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984	Os.53079.1.S1_at	11/11	4	+	21068001..21081373	Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984	Os.26731.2.A1_at	7/11	4	+	21068001..21081373	Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984	Os.49743.1.S1_at	1/11	4	+	21068001..21081373	Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g35000	Os.54995.1.S1_at	10/11	4	+	21084231..21086695	expressed protein
LOC_Os04g35010	Os.30520.2.S1_x_at	11/11	4	+	21089326..21092486	Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35010	Os.30520.1.S1_at	11/11	4	+	21089326..21092486	Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35010	Os.30520.2.S1_at	9/11	4	+	21089326..21092486	Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35020	Os.45970.1.S1_at	11/11	4	+	21094373..21097882	Cellulose synthase family protein, expressed
LOC_Os04g35030	Os.26822.1.S1_at	11/11	4	+	21100754..21106265	cellulose synthase family protein, putative, expressed
LOC_Os04g35050	Os.19099.1.S1_x_at	1/11	4	+	21112026..21113155	retrotransposon, putative, centromere-specific

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Gene Ontology Classification

GO id	Type	Name
GO:0045449	biological_process	regulation of transcription
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.30520.2.S1_at--62--363	1	Chr04:21090883..21090933 (25 bp)	CTTGATTTACCAGGATTTGACTGAC	LOC_Os04g35010
Os.30520.2.S1_at--688--1075	1	Chr04:21090884..21090934 (25 bp)	TTGATTTACCAGGATTTGACTGACA	LOC_Os04g35010
Os.30520.2.S1_at--934--879	1	Chr04:21090885..21091290 (25 bp)	TGATTTACCAGGATTTGACTGACAA	LOC_Os04g35010
Os.30520.2.S1_at--676--653	1	Chr04:21090886..21091291 (25 bp)	GATTTACCAGGATTTGACTGACAAG	LOC_Os04g35010
Os.30520.2.S1_at--632--13	1	Chr04:21090887..21091292 (25 bp)	ATTTACCAGGATTTGACTGACAAGG	LOC_Os04g35010
Os.30520.2.S1_at--23--1035	1	Chr04:21090888..21091293 (25 bp)	TTTACCAGGATTTGACTGACAAGGC	LOC_Os04g35010
Os.30520.2.S1_at--101--1045	1	Chr04:21090889..21091294 (25 bp)	TTACCAGGATTTGACTGACAAGGCC	LOC_Os04g35010
Os.30520.2.S1_at--274--993	1	Chr04:21090890..21091295 (25 bp)	TACCAGGATTTGACTGACAAGGCCT	LOC_Os04g35010
Os.30520.2.S1_at--174--169	1	Chr04:21090891..21091296 (25 bp)	ACCAGGATTTGACTGACAAGGCCTC	LOC_Os04g35010

Target Sequence

CTTGATTTACCAGGATTTGACTGACAAGGCCTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis