Browse Element(s) Details


Os.30520.2.S1_x_at

Description gb:NM_185228.1
DB_XREF= gi:34897541
GEN=OSJNBa0042L16.8
TID=Os.30520.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.30520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0042L16.8 (OSJNBa0042L16.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0042L16.8 (OSJNBa0042L16.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3501011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34984Os.26731.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.53079.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.26731.2.A1_at7/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.49743.1.S1_at1/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g35000Os.54995.1.S1_at10/114+21084231..21086695expressed protein
LOC_Os04g35010Os.30520.2.S1_x_at11/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35010Os.30520.1.S1_at11/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35010Os.30520.2.S1_at9/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35020Os.45970.1.S1_at11/114+21094373..21097882Cellulose synthase family protein, expressed
LOC_Os04g35030Os.26822.1.S1_at11/114+21100754..21106265cellulose synthase family protein, putative, expressed
LOC_Os04g35050Os.19099.1.S1_x_at1/114+21112026..21113155retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30520.2.S1_x_at--175--1691Chr04:21090891..21091296 (25 bp)
ACCAGGATTTGACTGACAAGGCCTC
LOC_Os04g35010
Os.30520.2.S1_x_at--960--8431Chr04:21091309..21091333 (25 bp)
GGCCATTGGCTACATCAAGACGTTG
LOC_Os04g35010
Os.30520.2.S1_x_at--530--8551Chr04:21091353..21091377 (25 bp)
TGGAGACCATCAAGACGGAGCGCGT
LOC_Os04g35010
Os.30520.2.S1_x_at--662--5491Chr04:21091597..21091621 (25 bp)
GAACATCACGCTGACGATGGCCGGC
LOC_Os04g35010
Os.30520.2.S1_x_at--946--7511Chr04:21091622..21091646 (25 bp)
GTGGACGCGTTCATCAACATGTGCC
LOC_Os04g35010
Os.30520.2.S1_x_at--58--8471Chr04:21091677..21091701 (25 bp)
TGGCGTTCGTCCTGGAGAAGCACCA
LOC_Os04g35010
Os.30520.2.S1_x_at--504--5971Chr04:21091691..21091715 (25 bp)
GAGAAGCACCAGATCGACGTCGTCA
LOC_Os04g35010
Os.30520.2.S1_x_at--526--9291Chr04:21091727..21091751 (25 bp)
TCCGCCGACCATGACAAGAGCTTGT
LOC_Os04g35010
Os.30520.2.S1_x_at--1025--2211Chr04:21091740..21091764 (25 bp)
ACAAGAGCTTGTTCAGCGTCCATGT
LOC_Os04g35010
Os.30520.2.S1_x_at--854--5391Chr04:21092138..21092162 (25 bp)
GAAGCATCCCTTCAGAGCACAGAGG
LOC_Os04g35010
Os.30520.2.S1_x_at--129--7711Chr04:21092161..21092185 (25 bp)
GGGTCTGACGCCTGAAGCCAAATAC
LOC_Os04g35010
Target Sequence 
ACCAGGATTTGACTGACAAGGCCTCCATTGTTGGGGAGGCCATTGGCTACATCAAGACGTTGGAGGACGTCGTCCAGAAG
CTGGAGACCATCAAGACGGAGCGCGTGCGCGCGCACCAGTGGGCGGCGGCGGCGGCAGCCGCCGTGGCAGCCAACGGCGG
CGGCGAGGGGTCCTCTCACTCTCACTCTCAGCCGCCGCGCCACGCCACCGCCGTCACAGTCGCCGTCGCCGAGCCTGCGC
CGGTGGCGGCGGCGGTGAACGCGCAGGCGCCGCAGAAGAAGGCGGCGGCGGCGGCGGCGCCGACGCTGCAGACGTGGTCG
GCGCCGAACATCACGCTGACGATGGCCGGCGTGGACGCGTTCATCAACATGTGCCTCCCGCGGCAGAGGGCGTCCTTCAC
CACGGTGGCGTTCGTCCTGGAGAAGCACCAGATCGACGTCGTCACCTCCACCATCTCCGCCGACCATGACAAGAGCTTGT
TCAGCGTCCATGTCCGCCTCAACGAAGCATCCCTTCAGAGCACAGAGGGTCTGACGCCTGAAGCCAAATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30520.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis