Browse Element(s) Details


Os.30620.1.S1_at

Description gb:AK108582.1
DB_XREF= gi:32993791
TID=Os.30620.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30620 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative MYB transcription factor (P0529H11.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-A03, full insert sequence.
FL= gb:AK108582.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6316011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63130Os.27691.2.S1_x_at1/111+36907695..36908836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63140NANA1+36912147..36913010retrotransposon protein, putative, unclassified
LOC_Os01g63150Os.42422.1.S1_at11/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.23640.3.S1_x_at6/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.22659.1.A1_at2/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.23640.1.S1_x_at1/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63160Os.30620.1.S1_at11/111+36933384..36934984Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g63170Os.38395.4.S1_x_at11/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.3.S1_x_at10/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.1.S1_at8/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.2.S1_x_at8/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63180Os.42421.1.S1_at11/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63180Os.18847.1.S1_at6/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63190Os.14830.1.S1_a_at11/111+36949678..36954511Multicopper oxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30620.1.S1_at--331--1571Chr01:36933947..36933971 (25 bp)
AGCTCCCGCACAAACAGTATCTGAA
LOC_Os01g63160
Os.30620.1.S1_at--467--10411Chr01:36933860..36933884 (25 bp)
TTATCTTGCCCGACCAGTTGCAAAG
LOC_Os01g63160
Os.30620.1.S1_at--623--6931Chr01:36933811..36933835 (25 bp)
GTAGGACCTGCTCAATCATCACAAA
LOC_Os01g63160
Os.30620.1.S1_at--1092--1551Chr01:36933775..36933799 (25 bp)
AGCTTTGCCACCAAGTTTGACTCAA
LOC_Os01g63160
Os.30620.1.S1_at--260--2371Chr01:36933752..36933776 (25 bp)
AAACCTTCATCCTTTCAAGCCTGAA
LOC_Os01g63160
Os.30620.1.S1_at--167--2231Chr01:36933700..36933724 (25 bp)
ACAAGTTTTGCTGCTGAGGTGCCAA
LOC_Os01g63160
Os.30620.1.S1_at--346--9031Chr01:36933655..36933679 (25 bp)
TGCAGTTCTCATGGGCAACTTCGTA
LOC_Os01g63160
Os.30620.1.S1_at--451--7051Chr01:36933633..36933657 (25 bp)
GTAAGAACTCATTGCTGGGTCCCGA
LOC_Os01g63160
Os.30620.1.S1_at--223--4691Chr01:36933620..36933644 (25 bp)
GCTGGGTCCCGAGTTTAATGAGTTT
LOC_Os01g63160
Os.30620.1.S1_at--317--6951Chr01:36933570..36933594 (25 bp)
GTAGTTTTGCTTCGTTGGTGTCAGA
LOC_Os01g63160
Os.30620.1.S1_at--559--2351Chr01:36933510..36933534 (25 bp)
AAAGCAGTGACACCTTAGCGCGGTC
LOC_Os01g63160
Target Sequence 
AGCTCCCGCACAAACAGTATCTGAAAGTTATGTTGGGGCATGGCAAATCGGGGATCAGAGTTGCAAAACTGAAGTTGTTG
ATCCACCTTATCTTGCCCGACCAGTTGCAAAGGTTGGTGCATTCAAACCATACAATGTAGGACCTGCTCAATCATCACAA
AAGGAAATGCTGAGCTTTGCCACCAAGTTTGACTCAAACCTTCATCCTTTCAAGCCTGAAAATGGGGTCTGCAAGTTTGT
TGATCCTACAAGTTTTGCTGCTGAGGTGCCAAATAAATGTGGGCATGGCTGCTGCAGTTCTCATGGGCAACTTCGTAAGA
ACTCATTGCTGGGTCCCGAGTTTAATGAGTTTGAAGATCATCCACCAATTTCAGATAGTAGTTTTGCTTCGTTGGTGTCA
GAAATTAGCAGCATTGCCTGGATGAAAAGTGGTTTGCAAAGCAGTGACACCTTAGCGCGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis