Browse Element(s) Details


Os.30694.3.S1_x_at

Description gb:NM_185259.1
DB_XREF= gi:34897603
GEN=OJ1723_B06.28
TID=Os.30694.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.30694 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) G-protein beta family-like protein (P0492E07.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) G-protein beta family-like protein (OJ1723_B06.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2253411/11WD-repeat protein 18, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22494Os.33350.3.S1_x_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.3.S1_x_at11/117+12651670..12654761expressed protein
LOC_Os07g22494OsAffx.5404.1.S1_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.5530.2.S1_s_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.2.S1_x_at8/117+12651670..12654761expressed protein
LOC_Os07g22494Os.33350.1.S1_x_at4/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.2.S1_s_at4/117+12651670..12654761expressed protein
LOC_Os07g22494Os.5530.2.S1_x_at2/117+12651670..12654761expressed protein
LOC_Os07g22494Os.42141.1.S1_x_at1/117+12651670..12654761expressed protein
LOC_Os07g22510Os.30411.1.S1_at11/117+12663580..12664674expressed protein
LOC_Os07g22520OsAffx.22628.1.S1_at11/117+12666279..12668588hypothetical protein
LOC_Os07g22534Os.30694.3.S1_x_at11/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.30694.1.S1_at11/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.30694.2.S1_at10/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534OsAffx.22627.1.S1_at10/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.7923.1.S1_x_at6/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.32421.1.A1_at1/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22550OsAffx.22699.1.S1_x_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.16111.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.20615.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.10039.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22560OsAffx.22250.2.S1_x_at11/117+12692786..12695518hypothetical protein
LOC_Os07g22570Os.34643.1.S1_at11/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570Os.29747.1.S1_s_at4/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570Os.29747.1.S1_at1/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22580Os.32592.1.S1_at11/117+12703673..12706326RhoGAP domain containing protein, expressed
LOC_Os07g22580Os.51549.1.S1_at1/117+12703673..12706326RhoGAP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30694.3.S1_x_at--1140--6051Chr07:12678653..12678677 (25 bp)
GAGTTGCTTGTCCAGTGGCATGCAC
LOC_Os07g22534
Os.30694.3.S1_x_at--550--151Chr07:12678628..12678652 (25 bp)
ATTATCGTGCTGTTAGGTGCCTTGC
LOC_Os07g22534
Os.30694.3.S1_x_at--866--7271Chr07:12678612..12678636 (25 bp)
GTGCCTTGCACTCTATGACTTTTTG
LOC_Os07g22534
Os.30694.3.S1_x_at--336--2331Chr07:12678561..12678581 (21 bp)
AAAGTTTGGGATCTCCTCACGATGC
LOC_Os07g22534
Os.30694.3.S1_x_at--84--1491Chr07:12678406..12678430 (25 bp)
AGCACGCACTTCCTGTAACCGATGT
LOC_Os07g22534
Os.30694.3.S1_x_at--146--2631Chr07:12678390..12678414 (25 bp)
AACCGATGTTGCTTGCTGTCATGGA
LOC_Os07g22534
Os.30694.3.S1_x_at--306--1551Chr07:12678178..12678202 (25 bp)
AGCATTTCATTTCCTTCTATTACTG
LOC_Os07g22534
Os.30694.3.S1_x_at--973--9911Chr07:12678158..12678182 (25 bp)
TACTGATTCAGTGGCGTTAGACCCA
LOC_Os07g22534
Os.30694.3.S1_x_at--151--1171Chr07:12678130..12678154 (25 bp)
AGTCATATTTTCTACGCTGGTGGTC
LOC_Os07g22534
Os.30694.3.S1_x_at--538--3171Chr07:12678074..12678098 (25 bp)
AATTGATGTCACCTCTCCTAGTAGT
LOC_Os07g22534
Os.30694.3.S1_x_at--338--6311Chr07:12678022..12678046 (25 bp)
GATGACCATAGGTTTGCCTACTCCT
LOC_Os07g22534
Target Sequence 
GAGTTGCTTGTCCAGTGGCATGCACATTATCGTGCTGTTAGGTGCCTTGCACTCTATGACTTTTTGCTTATCTCGGGGTC
TGAAGACGGTAGCATCAAAGTTTGGGATCTCCTCACGATGCTTGATGAGCAATCAAGATTGGAGGCAAAGACACAACACA
TATACAGCTTTAATCAGCACGCACTTCCTGTAACCGATGTTGCTTGCTGTCATGGAGCAATTGCTGTATCATCTTCAGAG
GATCACACCTGTAAAATTTGGAGTCTATCCGAGGGTAGAATGCTAAGAAGCATTTCATTTCCTTCTATTACTGATTCAGT
GGCGTTAGACCCAAGGAGTCATATTTTCTACGCTGGTGGTCGAGATGGAAAGATATATGTTACTGCTATGGGAATTGATG
TCACCTCTCCTAGTAGTGATGATTCAACTATTAATGGGGCTTTGGATGACCATAGGTTTGCCTACTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30694.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis