Browse Element(s) Details


Os.30828.1.S1_at

Description gb:AK108262.1
DB_XREF= gi:32993471
TID=Os.30828.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.30828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0021A09.6 (OSJNBb0021A09.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B06, full insert sequence.
FL= gb:AK108262.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g535507/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53500Os.32371.1.S1_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53500Os.32371.2.S1_x_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53520Os.4947.1.S1_at11/111+31065548..31067572reticulon family protein, putative, expressed
LOC_Os01g53530OsAffx.11588.1.S1_at11/111+31072286..31072719hypothetical protein
LOC_Os01g53530Os.38764.1.S1_x_at8/111+31072286..31072719hypothetical protein
LOC_Os01g53540OsAffx.23775.1.S1_at11/111+31074365..31074583hypothetical protein
LOC_Os01g53550Os.30828.1.S1_at7/111+31075148..31076022expressed protein
LOC_Os01g53560OsAffx.11589.1.S1_x_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.2.S1_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.1.S1_at5/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53570Os.32118.1.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.1.S1_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.2.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53580NANA1+31095323..310959493'-5' exonuclease family protein
LOC_Os01g53590OsAffx.21642.1.S1_s_at11/111+31097247..310998513'-5' exonuclease family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30828.1.S1_at--545--5951Chr01:31075525..31075549 (25 bp)
GAGCAACAAGCTCAGGCTGCCGTCC
LOC_Os01g53550
Os.30828.1.S1_at--486--911Chr01:31075470..31075494 (25 bp)
AGGCGGCTCTCGTGCAAGTGTCTGA
LOC_Os01g53550
Os.30828.1.S1_at--1053--7331Chr01:31075459..31075483 (25 bp)
GTGCAAGTGTCTGACGTTCCTGGAA
LOC_Os01g53550
Os.30828.1.S1_at--293--1891Chr01:31075446..31075470 (25 bp)
ACGTTCCTGGAACCGCTATATCAGA
LOC_Os01g53550
Os.30828.1.S1_at--152--5311Chr01:31075397..31075421 (25 bp)
GAAGGATCACGACGAGGCACGCTTA
LOC_Os01g53550
Os.30828.1.S1_at--355--6171Chr01:31075329..31075353 (25 bp)
GAGGATGCAATCAGGGACGCTATTC
LOC_Os01g53550
Os.30828.1.S1_at--516--411Chr01:31075320..31075344 (25 bp)
ATCAGGGACGCTATTCTGCACTGCA
LOC_Os01g53550
Os.30828.1.S1_at--684--9511NONE
TCTAAGGCGCTTAGCGCCTACCAAG
NONE
Os.30828.1.S1_at--1099--7551NONE
GGGCGCTGTAACTGACCGTGTAACG
NONE
Os.30828.1.S1_at--29--2571NONE
AACTGACCGTGTAACGCTCGGAGCG
NONE
Os.30828.1.S1_at--647--9191NONE
TCCAACATAACCCTTGTGCCAATTT
NONE
Target Sequence 
GAGCAACAAGCTCAGGCTGCCGTCCTTGGGGAGGAGGTGCGGCCGCGTGCTGCNGAGGCGGCTCTCGTGCAAGTGTCTGA
CGTTCCTGGAACCGCTATATCAGAAGATGGCGAGCTGCTGTGTCGGGAGAAGGATCACGACGAGGCACGCTTANGGCCGT
GCCGCCGCCGATGAGTCCCGCNATNNTAAGGTGTGCGAGGATGCAATCAGGGACGCTATTCTGCACTGCAAAANATCACT
CTAGATGATCACGCAGGGGGCACCTGGANTGCACGCAGGNTAGAGCTTGGGCCTTTTGGGCTGGAGNTTGCANTGTGTTA
CNATTGATCTTTATGCTTTGCCGTNGATAAGATTTGAAANNNNNNTTTTAATGGAATCAGCNCNAGATNGTGCTTTTTCA
TTAAATACAACAGGAGAAAAATACTGCATCTAAGGATAAAACTGTACACTATACAAAGTGCGGAATAAGCTCTCTAAGGC
GCTTAGCGCCTACCAAGGCCCACCAAAAAAGAAACCCCGTAAGGGGCGCTGTAACTGACCGTGTAACGCTCGGAGCGGGC
CTCCAACATAACCCTTGTGCCAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis