Browse Element(s) Details


Os.30866.1.S1_at

Description gb:AK108206.1
DB_XREF= gi:32993415
TID=Os.30866.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30866 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome 3,OSJNBa0002J24.5 (OJ1138_B05.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-D05, full insert sequence.
FL= gb:AK108206.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0246011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02410OsAffx.25903.2.S1_at10/117+824492..826048transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g02420OsAffx.16046.1.S1_at11/117+829996..831333hypothetical protein
LOC_Os07g02430Os.28541.1.S1_at11/117+832612..834027expressed protein
LOC_Os07g02430OsAffx.29773.1.S1_s_at1/117+832612..834027expressed protein
LOC_Os07g02440Os.36995.1.S1_at11/117+836369..839617Peroxidase 50 precursor, putative, expressed
LOC_Os07g02450OsAffx.28234.1.S1_at10/117+840165..842998Leucine Rich Repeat family protein, expressed
LOC_Os07g02460Os.30866.1.S1_at11/117+847265..848039expressed protein
LOC_Os07g02470OsAffx.16047.1.S1_x_at11/117+850804..853321hypothetical protein
LOC_Os07g02470OsAffx.16047.2.S1_at11/117+850804..853321hypothetical protein
LOC_Os07g02480Os.40486.1.S1_at1/117+856026..858194hypothetical protein
LOC_Os07g02490OsAffx.15220.1.S1_s_at11/117+863342..869930retrotransposon protein, putative, unclassified
LOC_Os07g02490OsAffx.15220.2.S1_s_at8/117+863342..869930retrotransposon protein, putative, unclassified
LOC_Os07g02500OsAffx.617.1.A1_x_at11/117+871299..872596hypothetical protein
LOC_Os07g02500OsAffx.617.1.A1_at11/117+871299..872596hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30866.1.S1_at--934--7351Chr07:847382..847406 (25 bp)
GTGAAGCGTGTCTGGCTCGGCCTCT
LOC_Os07g02460
Os.30866.1.S1_at--856--8631Chr07:847611..847635 (25 bp)
TGGGAGATGCTCAGCTCCATGGACG
LOC_Os07g02460
Os.30866.1.S1_at--559--3831Chr07:847733..847757 (25 bp)
CTGCTGCGCCTTCTGAGAAATGTTC
LOC_Os07g02460
Os.30866.1.S1_at--823--1411Chr07:847748..847772 (25 bp)
AGAAATGTTCATCCGATTCAGAGTC
LOC_Os07g02460
Os.30866.1.S1_at--147--6571Chr07:847762..847786 (25 bp)
GATTCAGAGTCGAAAGGAGCCCTTT
LOC_Os07g02460
Os.30866.1.S1_at--233--6591Chr07:847787..847811 (25 bp)
GATTCCTTTTGCCTTCTTGGATTAT
LOC_Os07g02460
Os.30866.1.S1_at--678--10171Chr07:847809..847833 (25 bp)
TATAACATTCGAGAGGCAGCCTTCA
LOC_Os07g02460
Os.30866.1.S1_at--788--8251Chr07:847823..847847 (25 bp)
GGCAGCCTTCAAAACGGAGGAATTT
LOC_Os07g02460
Os.30866.1.S1_at--49--6271Chr07:847937..847961 (25 bp)
GATGTGCTATTTGCGTTTGCGTGTA
LOC_Os07g02460
Os.30866.1.S1_at--832--6911Chr07:847976..848000 (25 bp)
GTATGTACACATAAGCTGCTCTGCT
LOC_Os07g02460
Os.30866.1.S1_at--894--3831Chr07:847991..848015 (25 bp)
CTGCTCTGCTTCTGATTCATGTACA
LOC_Os07g02460
Target Sequence 
GTGAAGCGTGTCTGGCTCGGCCTCTCCGCCCGCCTCGGCCTCCGGCGAACCACCGGCCTGGGGAAGCTGCGGAATGAGGT
GCGGACGTGCGAGTACAGCGACGTGCACGTCATGTGGGAGATGCTCAGCTCCATGGACGCCGCCGCGCCGCCGCGCCACG
CCGCCGCCGCCGCCGNNNGCAGGAAGAGGCGTCGCCCCGCCGCCACCGCCGCGTGGAGCCGCCTTGTCTCCTGCTGCTGC
TGCGCCTTCTGAGAAATGTTCATCCGATTCAGAGTCGAAAGGAGCCCTTTGATTCCTTTTGCCTTCTTGGATTATAACAT
TCGAGAGGCAGCCTTCAAAACGGAGGAATTTGGATGATTTTCATGGAAAATCAGTTCAATTCACTTGGAAAAAGGATAAA
ATTCTCGTGTTCAAAACGGGGAAGTAGGTAGTAGAGCAAAGATGTGCTATTTGCGTTTGCGTGTATGTATTCATGAGTTG
TATGTACACATAAGCTGCTCTGCTTCTGATTCATGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis