Browse Element(s) Details


Os.30910.1.S1_at

Description gb:AK108137.1
DB_XREF= gi:32993346
TID=Os.30910.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative rac GTPase activating protein (P0458E05.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-E04, full insert sequence.
FL= gb:AK108137.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g736309/11rac GTPase activating protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73580Os.11387.1.S1_a_at11/111+42953169..42957287Beta-fructofuranosidase, insoluble isoenzyme 4 precursor, putative, expressed
LOC_Os01g73590OsAffx.24031.1.S1_x_at11/111+42962576..42964753Sugar transporter family protein
LOC_Os01g73604OsAffx.2471.2.S1_at11/111+42965704..42971792Sm protein
LOC_Os01g73620Os.15240.1.A1_x_at11/111+42972937..42980919expressed protein
LOC_Os01g73620Os.12693.4.S1_at11/111+42972937..42980919expressed protein
LOC_Os01g73630Os.30910.1.S1_at9/111+42981345..42982564rac GTPase activating protein 1, putative, expressed
LOC_Os01g73640Os.48276.1.S1_at11/111+42986653..42989419expressed protein
LOC_Os01g73640Os.8747.1.S2_x_at1/111+42986653..42989419expressed protein
LOC_Os01g73644Os.7590.1.S1_at10/111+42990380..42993061expressed protein
LOC_Os01g73650OsAffx.24032.1.S1_at11/111+42995161..42998440expressed protein
LOC_Os01g73656Os.32551.2.S1_at11/111+42999869..43004927expressed protein
LOC_Os01g73662Os.32551.1.S1_at11/111+43006089..43007394expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0030675molecular_functionRac GTPase activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30910.1.S1_at--463--5951Chr01:42982194..42982218 (25 bp)
GAGCAACAAGATGGGCAGCCGCAAC
LOC_Os01g73630
Os.30910.1.S1_at--430--691Chr01:42982243..42982267 (25 bp)
ATGACGCACGCCATGGATCCATTCA
LOC_Os01g73630
Os.30910.1.S1_at--215--2731Chr01:42982276..42982300 (25 bp)
AAGCACGCCGTCCACGTCATGAACT
LOC_Os01g73630
Os.30910.1.S1_at--584--9611Chr01:42982313..42982337 (25 bp)
TCATCGACCGAGCTCTCAACGACGT
LOC_Os01g73630
Os.30910.1.S1_at--637--2371Chr01:42982340..42982364 (25 bp)
AAACCTGCAACAACTGATCCATCAA
LOC_Os01g73630
Os.30910.1.S1_at--14--371NONE
ATAATTAAGCCCACCATGCATTTCG
NONE
Os.30910.1.S1_at--1069--4531NONE
GCCCACCATGCATTTCGATTATATA
NONE
Os.30910.1.S1_at--660--8731Chr01:42982430..42982454 (25 bp)
TGTCATTCATTCGTAGCAGGGTTAA
LOC_Os01g73630
Os.30910.1.S1_at--255--3591Chr01:42982491..42982515 (25 bp)
CATTTTACTTTCGTCCATTACTCAG
LOC_Os01g73630
Os.30910.1.S1_at--136--9911Chr01:42982522..42982546 (25 bp)
TACTACTACATGTGTCGAGAGCTGA
LOC_Os01g73630
Os.30910.1.S1_at--909--5991Chr01:42982538..42982562 (25 bp)
GAGAGCTGACTTCTTGGGTCTGACT
LOC_Os01g73630
Target Sequence 
GAGCAACAAGATGGGCAGCCGCAACGTCGCCATGGTCTTCGCCCCCAACATGACGCACGCCATGGATCCATTCACCGCGC
TCAAGCACGCCGTCCACGTCATGAACTTCCTCACCATGCTCATCGACCGAGCTCTCAACGACGTCCAAACCTGCAACAAC
TGATCCATCAATATAATTAAGCCCACCATGCATTTCGATTATATATGATCACTTTAATTATAGCACGTAATTACATTGTC
ATTCATTCGTAGCAGGGTTAATTAATTAAGCTTAATCAAAATTGTTTGTTTTAGTTTCATTTTACTTTCGTCCATTACTC
AGTTTAATTACTACTACATGTGTCGAGAGCTGACTTCTTGGGTCTGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis