Browse Element(s) Details


Os.31636.1.S1_at

Description gb:AK106998.1
DB_XREF= gi:32992207
TID=Os.31636.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31636 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0456B03.10 (P0456B03.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-B12, full insert sequence.
FL= gb:AK106998.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3296011/11Endonuclease/Exonuclease/phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32930Os.33675.1.S1_at10/118+20290897..20294935expressed protein
LOC_Os08g32940OsAffx.22010.1.S1_at11/118+20296618..20298195Glycosyl hydrolase family 9 protein
LOC_Os08g32940OsAffx.22010.1.S1_x_at11/118+20296618..20298195Glycosyl hydrolase family 9 protein
LOC_Os08g32940OsAffx.15414.1.S1_x_at3/118+20296618..20298195Glycosyl hydrolase family 9 protein
LOC_Os08g32950OsAffx.20313.1.S1_x_at3/118+20313716..20315744hypothetical protein
LOC_Os08g32960Os.31636.1.S1_at11/118+20317190..20319428Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os08g32970Os.11277.1.S1_s_at11/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32970Os.11277.1.S1_at9/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32970Os.13008.2.S1_at1/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32980Os.15822.1.S1_s_at11/118+20328910..20332352expressed protein
LOC_Os08g32980Os.53996.1.S1_at11/118+20328910..20332352expressed protein
LOC_Os08g32990OsAffx.29480.1.S1_s_at11/118+20336123..20339148RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os08g32990OsAffx.29480.3.S1_at10/118+20336123..20339148RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os08g33000OsAffx.29480.2.S1_at11/118+20340751..20346111hypothetical protein
LOC_Os08g33000Os.52575.1.S1_x_at1/118+20340751..20346111hypothetical protein
LOC_Os08g33000OsAffx.29326.1.S1_at1/118+20340751..20346111hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31636.1.S1_at--15--2851Chr08:20317731..20317755 (25 bp)
AAGTACCACCTCAACTCCGACATGT
LOC_Os08g32960
Os.31636.1.S1_at--1117--2531Chr08:20317719..20317743 (25 bp)
AACTCCGACATGTTCTACTGGTCCA
LOC_Os08g32960
Os.31636.1.S1_at--204--5671Chr08:20317713..20317737 (25 bp)
GACATGTTCTACTGGTCCATCGACG
LOC_Os08g32960
Os.31636.1.S1_at--868--291Chr08:20317395..20317419 (25 bp)
ATAGCTAGCTTTGGACATGTCCCGC
LOC_Os08g32960
Os.31636.1.S1_at--155--771Chr08:20317379..20317403 (25 bp)
ATGTCCCGCTTCTGTGATATCTCAA
LOC_Os08g32960
Os.31636.1.S1_at--634--4911Chr08:20317372..20317396 (25 bp)
GCTTCTGTGATATCTCAAAGTGTGA
LOC_Os08g32960
Os.31636.1.S1_at--363--7471Chr08:20317353..20317377 (25 bp)
GTGTGAAAGAGTGCCGTACATTTTT
LOC_Os08g32960
Os.31636.1.S1_at--329--9891Chr08:20317321..20317345 (25 bp)
TACTCCTACTTGGTTGGGAGACGCT
LOC_Os08g32960
Os.31636.1.S1_at--700--5991Chr08:20317304..20317328 (25 bp)
GAGACGCTCTGACTTTTTACTCTAA
LOC_Os08g32960
Os.31636.1.S1_at--63--5671Chr08:20317294..20317318 (25 bp)
GACTTTTTACTCTAAGCTTAACTAG
LOC_Os08g32960
Os.31636.1.S1_at--1005--1531Chr08:20317280..20317304 (25 bp)
AGCTTAACTAGCTTTATAGAACTAT
LOC_Os08g32960
Target Sequence 
AAGTACCACCTCAACTCCGACATGTTCTACTGGTCCATCGACGCCGCCGCCGGCGGCGGCGACAAACAGCAGCAGCGCGC
GCCGGCATGGTGTGACAGGATACTGTGGCGAGGGAAGGGGATGAGGCAGGCGAGCTACGAGCGCTGCGGCGGCTACCGGA
TCTCCGACCACCGGCCGGTGAGGGCGTTGTTCGACGCCGTCTGCGAGCTCGCCGGAGGCGGCGTCGGCGTCGAGCACTCC
GCCGCCGGCATAGCTAGCTTTGGACATGTCCCGCTTCTGTGATATCTCAAAGTGTGAAAGAGTGCCGTACATTTTTTTTT
TGTTACTCCTACTTGGTTGGGAGACGCTCTGACTTTTTACTCTAAGCTTAACTAGCTTTATAGAACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31636.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis