Browse Element(s) Details


Os.31644.3.S1_at

Description gb:NM_185956.1
DB_XREF= gi:34898997
GEN=P0427D10.36
TID=Os.31644.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31644 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative BLE2 protein (P0427D10.36), mRNA.
PROD=putative BLE2 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4556011/11expressed protein
LOC_Os07g460403/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45510OsAffx.22536.1.S1_x_at11/117+27148571..27152621hypothetical protein
LOC_Os07g45510OsAffx.28918.7.S1_x_at2/117+27148571..27152621hypothetical protein
LOC_Os07g45520OsAffx.28919.1.S1_at11/117+27153254..27153906hypothetical protein
LOC_Os07g45520Os.20299.4.S1_x_at1/117+27153254..27153906hypothetical protein
LOC_Os07g45530OsAffx.1528.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45530OsAffx.22535.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45530Os.45911.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45540OsAffx.16728.1.S1_at3/117+27164172..27164904hypothetical protein
LOC_Os07g45550Os.32803.2.S1_at11/117+27170516..27173834hypothetical protein
LOC_Os07g45560Os.31644.3.S1_at11/117+27177191..27187989expressed protein
LOC_Os07g45560OsAffx.28918.5.S1_x_at1/117+27177191..27187989expressed protein
LOC_Os07g45560OsAffx.28918.7.S1_x_at1/117+27177191..27187989expressed protein
LOC_Os07g45570Os.9778.1.S2_at11/117+27195965..27199716expressed protein
LOC_Os07g45570Os.9778.1.S1_at10/117+27195965..27199716expressed protein
LOC_Os07g45570OsAffx.30966.4.S1_x_at4/117+27195965..27199716expressed protein
LOC_Os07g45580NANA7+27203562..27204557transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45590NANA7+27207879..27211419transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45600NANA7+27212170..27213339retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31644.3.S1_at--691--6871Chr07:27187210..27187234 (25 bp)
GTATATATATGTGGCGGCAACCCTA
LOC_Os07g45560
Os.31644.3.S1_at--551--2611Chr07:27187228..27187252 (25 bp)
AACCCTATTGTGTCGTATGTGCCAG
LOC_Os07g45560
Os.31644.3.S1_at--834--10111Chr07:27187243..27187267 (25 bp)
TATGTGCCAGCACGCCCTAGCCAAG
LOC_Os07g45560
Os.31644.3.S1_at--185--4551Chr07:27187256..27187280 (25 bp)
GCCCTAGCCAAGCTCACAGAATCAG
LOC_Os07g45560
Os.31644.3.S1_at--942--911Chr07:27187287..27187311 (25 bp)
AGGAACTATGTGAGACCTTACATGA
LOC_Os07g45560
Os.31644.3.S1_at--338--4311Chr07:27187302..27187556 (25 bp)
CCTTACATGAGGTCTTGGAGAGAAT
LOC_Os07g45560
Os.31644.3.S1_at--364--2331Chr07:27187677..27187701 (25 bp)
AAAGAGGCTAGTTGACGTACTGAAT
LOC_Os07g45560
Os.31644.3.S1_at--166--272Chr07:27476588..27476612 (25 bp)
ATATGAACCCAGGTGCTCACTGTCC
LOC_Os07g46040
Os.31644.3.S1_at--189--1052Chr07:27476598..27476622 (25 bp)
AGGTGCTCACTGTCCTGGGATTAGG
LOC_Os07g46040
Os.31644.3.S1_at--1022--5191Chr07:27187807..27187831 (25 bp)
GAATTCCGAATGATAGAAGCACTGT
LOC_Os07g45560
Os.31644.3.S1_at--515--5012Chr07:27476770..27476794 (25 bp)
GCAGGTTTTATGGAATACAGCACAC
LOC_Os07g46040
Target Sequence 
GTATATATATGTGGCGGCAACCCTATTGTGTCGTATGTGCCAGCACGCCCTAGCCAAGCTCACAGAATCAGACCTGAAGG
AACTATGTGAGACCTTACATGAGGTCTTGGAGAGAATAATGAATGCAGAAGGGGCAGAACTAGAGATCCTCATTGGCCTA
AGTTCACAGATATGCAAAGTCATTCCTGAAGAATTTTCCCAAGAACTAGATGACGAACAGATTAAGCAAAGATTCATAAA
GAGGCTAGTTGACGTACTGAATGCAAATATGAACCCAGGTGCTCACTGTCCTGGGATTAGGAGGGTGATACTTGAGCAAT
CTATATACATGATGGAGGGCAATTCTCACTATACCAGTTGTTTCAATGAATTCCGAATGATAGAAGCACTGTGGATGGTA
GAAGAGATGCCCTCAGGGGTTGAGAACTACAGGATTTTCTTGGGTGACGCAGGTTTTATGGAATACAGCACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31644.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis