Browse Element(s) Details


Os.31710.1.S1_at

Description gb:AK106876.1
DB_XREF= gi:32992085
TID=Os.31710.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31710 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0577B11.16 (P0577B11.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-E03, full insert sequence.
FL= gb:AK106876.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0649011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06480Os.15438.1.S1_at11/118+3660748..3669467expressed protein
LOC_Os08g06490Os.31710.1.S1_at11/118+3670687..3673857pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.5723.2.S1_x_at11/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.5723.1.S1_x_at11/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500Os.25378.2.A1_at6/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.7080.1.S1_x_at1/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06510Os.25378.1.S1_at11/118+3679713..3681665Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g06520Os.8869.1.S1_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_x_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_s_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.8869.1.S1_x_at10/118+3684401..3687023expressed protein
LOC_Os08g06530Os.8000.1.S1_at11/118+3687961..3690299Rubredoxin family protein, expressed
LOC_Os08g06540Os.36756.1.S1_at11/118+3691049..3691818expressed protein
LOC_Os08g06550Os.12390.1.S1_at5/118+3691986..3694155Acyl-CoA-binding protein, putative, expressed
LOC_Os08g06560OsAffx.21983.1.S1_at10/118+3696299..3699438hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31710.1.S1_at--935--6611Chr08:3672346..3672370 (25 bp)
GTTGGGTTCAGGCTTCTTAAGTCCA
LOC_Os08g06490
Os.31710.1.S1_at--841--8291Chr08:3672356..3672380 (25 bp)
GGCTTCTTAAGTCCATTCTCTTGAT
LOC_Os08g06490
Os.31710.1.S1_at--1148--2771Chr08:3672561..3672584 (24 bp)
AAGAGAATGCTGGAGTCTGCTGTCT
LOC_Os08g06490
Os.31710.1.S1_at--998--6091Chr08:3672572..3672596 (25 bp)
GAGTCTGCTGTCTCTTGTTTGGGCA
LOC_Os08g06490
Os.31710.1.S1_at--1004--8891Chr08:3672632..3672656 (25 bp)
TGAGCATTGATCAGGAATTCCGTAA
LOC_Os08g06490
Os.31710.1.S1_at--102--6871Chr08:3672660..3672684 (25 bp)
GTTTGTTATCATCACCCTTTGTTCA
LOC_Os08g06490
Os.31710.1.S1_at--499--3551Chr08:3672669..3672693 (25 bp)
CATCACCCTTTGTTCAACACGTAAA
LOC_Os08g06490
Os.31710.1.S1_at--961--3871Chr08:3672699..3672723 (25 bp)
CTGTTAGCTATGTAATGTGTGCGCC
LOC_Os08g06490
Os.31710.1.S1_at--1142--7451Chr08:3672715..3672739 (25 bp)
GTGTGCGCCTTCCATAATTGATGCT
LOC_Os08g06490
Os.31710.1.S1_at--1022--5911Chr08:3672845..3672869 (25 bp)
GAGCTTCAAACGCATATAACACTGA
LOC_Os08g06490
Os.31710.1.S1_at--694--751Chr08:3672925..3672949 (25 bp)
ATGTAATCACCTGTTTTCTGATGGC
LOC_Os08g06490
Target Sequence 
GTTGGGTTCAGGCTTCTTAAGTCCATTCTCTTGATTTCACTGATTTCGATTAATTCATTCAGTTCATAAATCAACATTCA
AATATTCCTTGCGTCAAAAAAACATTCAAATATTCAAAGCTTGACTAGTAAAATTTGACAAGAGAATGCTGGAGTCTGCT
GTCTCTTGTTTGGGCAGCTTAACAAATTTATACAAGGTTCCCCCGAAACTTTGAGCATTGATCAGGAATTCCGTAATTGG
TTTGTTATCATCACCCTTTGTTCAACACGTAAATCTTTCTGTTAGCTATGTAATGTGTGCGCCTTCCATAATTGATGCTA
ATTTTCCATGCACATAGAAACGTTCTTTTGAAATGCTGATGAATATCTTTAATAGTTGCTTTTGGGCAAGTAGGAAAATA
GCTTTGTTAAGTTGATAAATTCATGAGCTTCAAACGCATATAACACTGATTGTTACTGCATATTGTAATTAGGATGGAAT
TTTTTCATTTCAAATCCACACTAAATGTAATCACCTGTTTTCTGATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis