Browse Element(s) Details


Os.31860.1.S1_at

Description gb:AK102427.1
DB_XREF= gi:32987636
TID=Os.31860.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.31860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1011A07.30 (B1011A07.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093F20, full insert sequence.
FL= gb:AK106622.1 gb:AK106418.1 gb:AK102427.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2114411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21100NANA1+11756877..11757779expressed protein
LOC_Os01g21110OsAffx.11138.1.S1_at11/111+11761478..11764389hypothetical protein
LOC_Os01g21110OsAffx.20956.1.S1_at1/111+11761478..11764389hypothetical protein
LOC_Os01g21110OsAffx.988.1.S1_at1/111+11761478..11764389hypothetical protein
LOC_Os01g21120Os.8031.1.S1_at10/111+11766391..11767460AP2 domain containing protein, expressed
LOC_Os01g21130NANA1+11774954..11775648expressed protein
LOC_Os01g21144Os.31860.1.S2_a_at11/111+11782721..11786296expressed protein
LOC_Os01g21144Os.31860.1.S1_at11/111+11782721..11786296expressed protein
LOC_Os01g21160OsAffx.23317.1.S1_at11/111+11786626..117915102-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os01g21160Os.19003.1.S1_a_at11/111+11786626..117915102-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os01g21170Os.45735.1.A1_at3/111+11794211..11794432hypothetical protein
LOC_Os01g21180Os.18476.1.S1_at11/111+11794660..11798266MLL, putative, expressed
LOC_Os01g21190Os.14919.1.S1_at2/111+11800291..11806554SWIM zinc finger family protein
LOC_Os01g21190OsAffx.29313.1.S1_at2/111+11800291..11806554SWIM zinc finger family protein
LOC_Os01g21200OsAffx.23000.1.S1_at4/111+11807643..11808585hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31860.1.S1_at--862--9391Chr01:11784949..11784973 (25 bp)
TCGTCCACCACGCTTTAAGTATCAT
LOC_Os01g21144
Os.31860.1.S1_at--973--5411Chr01:11784924..11784948 (25 bp)
GAAGCCGACATCACTTTGTGCTGCA
LOC_Os01g21144
Os.31860.1.S1_at--246--5831Chr01:11784897..11784917 (21 bp)
GACCGTCGCCAAATGATGCCGATAG
LOC_Os01g21144
Os.31860.1.S1_at--1029--1231Chr01:11784332..11784356 (25 bp)
AGTTGCCATGGTTGTCTTATCGAGA
LOC_Os01g21144
Os.31860.1.S1_at--343--5431Chr01:11784309..11784333 (25 bp)
GAACCACAGAATTGATCACCCGGAA
LOC_Os01g21144
Os.31860.1.S1_at--198--2691Chr01:11784286..11784310 (25 bp)
AAGCTGGCATGCGTTTTTGTGGGAA
LOC_Os01g21144
Os.31860.1.S1_at--919--11Chr01:11784217..11784241 (25 bp)
ATTGGCCAAGCATAGCTGACGTCGA
LOC_Os01g21144
Os.31860.1.S1_at--612--771Chr01:11784169..11784193 (25 bp)
AGGACGTCGGACTTGTTGAGTACTT
LOC_Os01g21144
Os.31860.1.S1_at--1151--6291Chr01:11784062..11784086 (25 bp)
GATGATGATATCTCCGGCTATTCCA
LOC_Os01g21144
Os.31860.1.S1_at--829--9811Chr01:11784010..11784034 (25 bp)
TAACTTGCAGTACTATTCTTCACCT
LOC_Os01g21144
Os.31860.1.S1_at--820--10511Chr01:11783992..11784016 (25 bp)
TTCACCTACAACTTTCTCGAACAGT
LOC_Os01g21144
Target Sequence 
TCGTCCACCACGCTTTAAGTATCATGAAGCCGACATCACTTTGTGCTGCATAGTGCGACCGTCGCCAAATGATGCCGATA
GTTGCCATGGTTGTCTTATCGAGAACCACAGAATTGATCACCCGGAAGCTGGCATGCGTTTTTGTGGGAAGAAGCATAGC
AAGATGGATCCAAATGGCTATGGCCATGGCTGGGATTGGCCAAGCATAGCTGACGTCGAATACAGGTTTTTTGATCCTGA
CAAGGACGTCGGACTTGTTGAGTACTTGGATGGAGTTATAACCGATATCAAAGCACGTATCAGAGACCTATCTATCAGGG
ATGAAGACGACAGTGACGAGGACAGTAGCGATGATGATATCTCCGGCTATTCCATGAGATTTGTCTGATGTTGTGATGCT
CTAACTTGCAGTACTATTCTTCACCTACAACTTTCTCGAACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis