Browse Element(s) Details


Os.32371.2.S1_x_at

Description gb:NM_191115.1
DB_XREF= gi:34909313
GEN=OSJNBb0021A09.3
TID=Os.32371.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0021A09.3 (OSJNBb0021A09.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0021A09.3 (OSJNBb0021A09.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5350011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53440OsAffx.11587.1.S1_at11/111+31035128..31035529hypothetical protein
LOC_Os01g53460Os.25227.2.S1_at11/111+31039021..31040692UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53450Os.25227.1.S1_x_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.41946.1.S1_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.25227.1.S1_s_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.41946.1.S1_s_at6/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53470Os.28576.1.S1_at11/111+31045778..31046800Harpin-induced protein 1 containing protein, expressed
LOC_Os01g53480NANA1+31047595..31050103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53500Os.32371.1.S1_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53500Os.32371.2.S1_x_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53520Os.4947.1.S1_at11/111+31065548..31067572reticulon family protein, putative, expressed
LOC_Os01g53530OsAffx.11588.1.S1_at11/111+31072286..31072719hypothetical protein
LOC_Os01g53530Os.38764.1.S1_x_at8/111+31072286..31072719hypothetical protein
LOC_Os01g53540OsAffx.23775.1.S1_at11/111+31074365..31074583hypothetical protein
LOC_Os01g53550Os.30828.1.S1_at7/111+31075148..31076022expressed protein
LOC_Os01g53560OsAffx.11589.1.S1_x_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.2.S1_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.1.S1_at5/111+31080145..31087800phosphoesterase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32371.2.S1_x_at--617--9451Chr01:31058019..31058043 (25 bp)
TCGGCCTCGGGTACTCGATCGCCAT
LOC_Os01g53500
Os.32371.2.S1_x_at--689--1991Chr01:31058007..31058031 (25 bp)
ACTCGATCGCCATCGCGCTGGGATT
LOC_Os01g53500
Os.32371.2.S1_x_at--939--8631Chr01:31057989..31058013 (25 bp)
TGGGATTCCTCGTCCTGCTCGCGTC
LOC_Os01g53500
Os.32371.2.S1_x_at--243--3931Chr01:31057764..31057788 (25 bp)
CGGCCATCGCGTCGTACCCGAAGGT
LOC_Os01g53500
Os.32371.2.S1_x_at--417--1831Chr01:31057713..31057737 (25 bp)
ACGCCGACGCCATGTGCTCGATCTG
LOC_Os01g53500
Os.32371.2.S1_x_at--603--4051Chr01:31057695..31057719 (25 bp)
CGATCTGCCTCAGCGAGTACGCGGA
LOC_Os01g53500
Os.32371.2.S1_x_at--400--6031Chr01:31057666..31057690 (25 bp)
GAGATGCTGCGCGTGATGCCCGACT
LOC_Os01g53500
Os.32371.2.S1_x_at--264--631Chr01:31057663..31057687 (25 bp)
ATGCTGCGCGTGATGCCCGACTGCA
LOC_Os01g53500
Os.32371.2.S1_x_at--1089--8851Chr01:31057653..31057677 (25 bp)
TGATGCCCGACTGCAGGCACAGGTT
LOC_Os01g53500
Os.32371.2.S1_x_at--1138--2111Chr01:31057635..31057659 (25 bp)
ACAGGTTCCACGTCTGCTGCCTCGA
LOC_Os01g53500
Os.32371.2.S1_x_at--540--3951Chr01:31057597..31057621 (25 bp)
CGGAACGCGTCGTGCCCCGTGTGCA
LOC_Os01g53500
Target Sequence 
TCGGCCTCGGGTACTCGATCGCCATCGCGCTGGGATTCCTCGTCCTGCTCGCGTCGCTCCTCCTCGCGTCATACTTCTGC
TTCCGCCGCGGGGGCGGCGGCGGGCACTTCTCCGGCGTGCTCACCCCGAGCTCCAGCTCCAGCCACCTCTCCATCACCGT
CCCGCGCGTGCTCTTCGTCGCGGAGGGGTCCGAGTCCCCCGACGCCTACTCCTCGGGCGTCGCGGCCGCGTCGTCCCCCG
TGGGGCTCGACCCCGCGGCCATCGCGTCGTACCCGAAGGTCCCCTTCTACAGCGGCGCCGGCGCGGACGCCGACGCCATG
TGCTCGATCTGCCTCAGCGAGTACGCGGACGGGGAGATGCTGCGCGTGATGCCCGACTGCAGGCACAGGTTCCACGTCTG
CTGCCTCGACGCCTGGCTGCGCCGGAACGCGTCGTGCCCCGTGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32371.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis