Browse Element(s) Details


Os.32551.1.S1_at

Description gb:AK103753.1
DB_XREF= gi:32988962
TID=Os.32551.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32551 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) reverse transcriptase -like protein (P0458E05.36), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033143C16, full insert sequence.
FL= gb:AK103753.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7366211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73630Os.30910.1.S1_at9/111+42981345..42982564rac GTPase activating protein 1, putative, expressed
LOC_Os01g73640Os.48276.1.S1_at11/111+42986653..42989419expressed protein
LOC_Os01g73640Os.8747.1.S2_x_at1/111+42986653..42989419expressed protein
LOC_Os01g73644Os.7590.1.S1_at10/111+42990380..42993061expressed protein
LOC_Os01g73650OsAffx.24032.1.S1_at11/111+42995161..42998440expressed protein
LOC_Os01g73656Os.32551.2.S1_at11/111+42999869..43004927expressed protein
LOC_Os01g73662Os.32551.1.S1_at11/111+43006089..43007394expressed protein
LOC_Os01g73670Os.8761.3.S1_x_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.2.S1_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.1.S1_s_at10/111+43011790..43016248expressed protein
LOC_Os01g73680Os.27288.2.S1_x_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.2.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.1.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.1.S1_x_at9/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.2.S1_at1/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73690Os.42980.1.S1_at11/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73690Os.26995.1.S1_at1/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73700Os.42977.2.S1_x_at2/111+43027029..43028099transposon protein, putative, unclassified
LOC_Os01g73710Os.42977.2.S1_x_at11/111+43031130..43032223transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
GO:0004523molecular_functionribonuclease H activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32551.1.S1_at--829--411Chr01:43006816..43006840 (25 bp)
ATCATGCCTCTCTGCGCAAAGGAAA
LOC_Os01g73662
Os.32551.1.S1_at--1109--10251Chr01:43006908..43006932 (25 bp)
TTTGATGGAGCCTTCCGAGCTGTAA
LOC_Os01g73662
Os.32551.1.S1_at--375--7871Chr01:43006944..43006968 (25 bp)
GGTTATGATTTCCTGGTTCGTGACC
LOC_Os01g73662
Os.32551.1.S1_at--337--4751Chr01:43007037..43007061 (25 bp)
GCTGAAGCTGGTTTAGCAGGCCTAA
LOC_Os01g73662
Os.32551.1.S1_at--752--8411Chr01:43007055..43007079 (25 bp)
GGCCTAAAATCTGCTATTTCGCATG
LOC_Os01g73662
Os.32551.1.S1_at--683--7512Chr01:43007097..43007121 (25 bp)
GTGGAAACTGATTCACCATCCTAGT
LOC_Os01g73662
Os.32551.1.S1_at--820--1371Chr01:43007123..43007147 (25 bp)
AGAGCCTTTCACTCTCATGAGTACG
LOC_Os01g73662
Os.32551.1.S1_at--495--9511Chr01:43007151..43007175 (25 bp)
TCTCTCCTTGCAGTTCTATCGTAAG
LOC_Os01g73662
Os.32551.1.S1_at--417--6631Chr01:43007213..43007237 (25 bp)
GTTGTGTTTAATTATGCCCCGTGAT
LOC_Os01g73662
Os.32551.1.S1_at--695--2731Chr01:43007295..43007319 (25 bp)
AAGCAAGTGTGTGGGCTGACCTGTC
LOC_Os01g73662
Os.32551.1.S1_at--182--8931Chr01:43007311..43007335 (25 bp)
TGACCTGTCCCTGACATTGTACAAA
LOC_Os01g73662
Target Sequence 
ATCATGCCTCTCTGCGCAAAGGAAAACATCCCAAGGTGAATGTGCAAAGAAATAAGTGGGTTCCCCCTGTAGATGGTAAT
CTGAAGCTCAACTTTGATGGAGCCTTCCGAGCTGTAAACAAGTCTGGTGGTTATGATTTCCTGGTTCGTGACCNCCGTGG
ATGTGCTGTTCTTGCGGGTGCCGGCTGCCTGGAACATGTACATGATGCTTTTGCAGCTGAAGCTGAAGCTGGTTTAGCAG
GCCTAAAATCTGCTATTTCGCATGGTATTAACTCTGTCCAGGTGGAAACTGATTCACCATCCTAGTGAGAGCCTTTCACT
CTCATGAGTACGCTCTCTCTCCTTGCAGTTCTATCGTAAGGGAGATCAAGGATCTCGTCCATTTAAATTTTTCTAGTGTT
GTGTTTAATTATGCCCCGTGATCATGTAATGTGGCTGCGCATAAGTTAGCTCAAATGGGTGTGTGCTGGGAATTGGGTCA
AGCAAGTGTGTGGGCTGACCTGTCCCTGACATTGTACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis