Browse Element(s) Details


Os.32632.1.S1_a_at

Description gb:AK103457.1
DB_XREF= gi:32988666
TID=Os.32632.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32632 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0431G06.10 (P0431G06.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129L01, full insert sequence.
FL= gb:AK103457.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7235010/11amidohydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72330Os.15908.1.S1_s_at11/111+42275801..42279237Two-component response regulator ARR8, putative, expressed
LOC_Os01g72340Os.28112.1.S1_at11/111+42281527..42289634Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain containing protein, expressed
LOC_Os01g72350Os.32632.1.S1_a_at10/111+42290975..42296957amidohydrolase family protein, putative, expressed
LOC_Os01g72370Os.12498.1.S1_at11/111+42298293..42304987Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g72360Os.12498.2.S1_at11/111+42298383..42300057expressed protein
LOC_Os01g72380Os.19497.1.S1_at11/111+42308965..42311893expressed protein
LOC_Os01g72390OsAffx.9670.1.S1_at11/111+42312927..42315705NB-ARC domain containing protein
LOC_Os01g72400OsAffx.30226.2.S1_s_at5/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.4.S1_x_at5/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.2.S1_x_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.4.S1_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.442.1.S1_x_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.24587.1.S1_x_at3/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.442.1.S1_at1/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32632.1.S1_a_at--1031--5271Chr01:42295805..42295829 (25 bp)
GAAGTCCCTTGGATCCCTGCGGAAC
LOC_Os01g72350
Os.32632.1.S1_a_at--508--6291NONE
GATGATTCTCTGAAAGCACATACTA
NONE
Os.32632.1.S1_a_at--757--2071Chr01:42296425..42296449 (25 bp)
ACATACTATATCTGCCGCCTATGCC
LOC_Os01g72350
Os.32632.1.S1_a_at--128--10151Chr01:42296444..42296468 (25 bp)
TATGCCTGCTTCCTTGACCATGTTT
LOC_Os01g72350
Os.32632.1.S1_a_at--335--10751Chr01:42296457..42296481 (25 bp)
TTGACCATGTTTTGGGCAGCCTATC
LOC_Os01g72350
Os.32632.1.S1_a_at--46--2851Chr01:42296489..42296513 (25 bp)
AAGTACGCCGATTTTGTGATCCTGC
LOC_Os01g72350
Os.32632.1.S1_a_at--1015--10391Chr01:42296500..42296524 (25 bp)
TTTTGTGATCCTGCCTAGCACATCA
LOC_Os01g72350
Os.32632.1.S1_a_at--980--10011Chr01:42296515..42296539 (25 bp)
TAGCACATCATGGAACGAGTTCGGC
LOC_Os01g72350
Os.32632.1.S1_a_at--927--6711Chr01:42296533..42296557 (25 bp)
GTTCGGCAGCGACATAACGGACCAC
LOC_Os01g72350
Os.32632.1.S1_a_at--564--2571Chr01:42296548..42296572 (25 bp)
AACGGACCACGTCTTGGCAACATAT
LOC_Os01g72350
Os.32632.1.S1_a_at--918--5451Chr01:42296575..42296599 (25 bp)
GAACGGCAAGCAGGCCTATCCATGA
LOC_Os01g72350
Target Sequence 
GAAGTCCCTTGGATCCCTGCGGAACGCTTATCTNTAGATGATTCTCTGAAAGCACATACTATATCTGCCGCCTATGCCTG
CTTCCTTGACCATGTTTTGGGCAGCCTATCTGAAGGAAAGTACGCCGATTTTGTGATCCTGCCTAGCACATCATGGAACG
AGTTCGGCAGCGACATAACGGACCACGTCTTGGCAACATATGTGAACGGCAAGCAGGCCTATCCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32632.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis