Browse Element(s) Details


Os.32813.1.A1_at

Description gb:AK102779.1
DB_XREF= gi:32987988
TID=Os.32813.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32813 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107J24, full insert sequence.
FL= gb:AK102779.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5818011/11WD-40 repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58140Os.57117.1.S1_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.57117.1.S1_x_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.54216.1.S1_at9/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58150Os.35344.18.S1_x_at11/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150Os.35344.3.S1_x_at9/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150OsAffx.22940.5.S1_x_at3/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58160OsAffx.26653.1.S1_at10/114+34420813..34421922hypothetical protein
LOC_Os04g58170Os.18359.1.S1_at11/114+34423741..34425446fiber protein Fb34, putative, expressed
LOC_Os04g58180Os.32813.1.A1_at11/114+34430540..34436142WD-40 repeat family protein, putative, expressed
LOC_Os04g58190Os.15992.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed
LOC_Os04g58190OsAffx.4206.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed
LOC_Os04g58200Os.12363.1.S1_at11/114+34443989..34445518Protochlorophyllide reductase A, chloroplast precursor, putative, expressed
LOC_Os04g58210Os.53350.1.S1_at9/114+34445870..34449567Uncharacterized LmbE-like protein, COG2120 containing protein, expressed
LOC_Os04g58220NANA4+34450328..34452578Sugar transporter family protein
LOC_Os04g58230NANA4+34453776..34455771Sugar transporter family protein
LOC_Os04g58240Os.7635.1.S1_s_at11/114+34458466..34462684expressed protein
LOC_Os04g58240OsAffx.4209.1.S1_at11/114+34458466..34462684expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32813.1.A1_at--47--5091Chr04:34435605..34435629 (25 bp)
GCACCAAGCGCCCAGTTTGTGAAGG
LOC_Os04g58180
Os.32813.1.A1_at--218--831Chr04:34435659..34435683 (25 bp)
ATGGAGTATCAACGTCCTGGCCTGA
LOC_Os04g58180
Os.32813.1.A1_at--545--551Chr04:34435726..34435750 (25 bp)
ATCCGACCTTTGCATTGGAGCTTTG
LOC_Os04g58180
Os.32813.1.A1_at--68--1571Chr04:34435744..34435768 (25 bp)
AGCTTTGGATGTTCAGCGCCGGTCA
LOC_Os04g58180
Os.32813.1.A1_at--531--10071Chr04:34435813..34435837 (25 bp)
TAGGGTGTTCCAGAATTTCGGCTTC
LOC_Os04g58180
Os.32813.1.A1_at--492--9431Chr04:34435830..34435854 (25 bp)
TCGGCTTCCCGGTTCAAGTGTAAAG
LOC_Os04g58180
Os.32813.1.A1_at--156--6031Chr04:34435873..34435897 (25 bp)
GAGATGTCCGTTTGTTTACTGTATA
LOC_Os04g58180
Os.32813.1.A1_at--473--10051Chr04:34435906..34435930 (25 bp)
TAGTTTTTTCTCCATTTCACCTAGT
LOC_Os04g58180
Os.32813.1.A1_at--191--9831Chr04:34435943..34435967 (25 bp)
TAAAAGATTTCCCTGTTTCGCTGTC
LOC_Os04g58180
Os.32813.1.A1_at--852--10291Chr04:34435958..34435982 (25 bp)
TTTCGCTGTCAGGTTGGGAGCCCCA
LOC_Os04g58180
Os.32813.1.A1_at--647--9791Chr04:34436002..34436026 (25 bp)
TAAGCACCACACTATTTTTTACCCT
LOC_Os04g58180
Target Sequence 
GCACCAAGCGCCCAGTTTGTGAAGGTGTTGCAAGCACAAGCAATCCTCCAGCGGATGGAGTATCAACGTCCTGGCCTGAC
GAGAAACAATCGTCTGCCAAGAGCAGTCCTGGTCACTGCTCATCCGACCTTTGCATTGGAGCTTTGGATGTTCAGCGCCG
GTCAGCTTGGGGATTGGTGATTGTCACTGCAGGAAGGGGTGGTGAAATTAGGGTGTTCCAGAATTTCGGCTTCCCGGTTC
AAGTGTAAAGCTAGTGTGAGAATATTCAGAGATGTCCGTTTGTTTACTGTATAGATATCGTTAGTTTTTTCTCCATTTCA
CCTAGTTCTTTTACTAGCTAAAAGATTTCCCTGTTTCGCTGTCAGGTTGGGAGCCCCAGTAGCTCAATCCAACTTGCTAA
GCACCACACTATTTTTTACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32813.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis