Browse Element(s) Details


Os.32879.1.S2_at

Description gb:AK102533.1
DB_XREF= gi:32987742
TID=Os.32879.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32879 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Lycopersicon esculentum Hcr2-5D (AF053998) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033096F04, full insert sequence.
FL= gb:AK102533.1 gb:AK073444.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0667011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06620Os.9437.1.S1_at11/111+3119707..3120853expressed protein
LOC_Os01g06630NANA1+3121609..3122002Small hydrophilic plant seed protein
LOC_Os01g06640Os.1443.1.S1_a_at11/111+3125794..3127451Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g06650OsAffx.21870.3.S1_x_at1/111+3131019..3132211hypothetical protein
LOC_Os01g06650OsAffx.21870.2.S1_x_at1/111+3131019..3132211hypothetical protein
LOC_Os01g06660Os.1445.1.S1_at11/111+3132906..3137019Pyruvate decarboxylase isozyme 1, putative, expressed
LOC_Os01g06670Os.32879.1.S1_at11/111+3140403..3143614Leucine Rich Repeat family protein, expressed
LOC_Os01g06670Os.32879.1.S2_at11/111+3140403..3143614Leucine Rich Repeat family protein, expressed
LOC_Os01g06680OsAffx.1685.1.S1_at11/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.22766.1.S1_at11/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.25437.1.S1_at2/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.15781.1.S1_at2/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680Os.8855.1.S1_at1/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06690OsAffx.24927.2.S1_x_at11/111+3153981..3155789hypothetical protein
LOC_Os01g06690OsAffx.24927.1.S1_x_at7/111+3153981..3155789hypothetical protein
LOC_Os01g06700OsAffx.30352.2.S1_at11/111+3158122..3164468retrotransposon protein, putative, unclassified
LOC_Os01g06710OsAffx.30352.3.S1_at11/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.18947.1.S1_at2/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.39421.1.S1_at2/111+3164802..3168215hypothetical protein
LOC_Os01g06710OsAffx.30352.1.S1_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.27342.1.S2_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06710OsAffx.20967.1.S1_x_at1/111+3164802..3168215hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32879.1.S2_at--70--6191Chr01:3140977..3141001 (25 bp)
GAGGACCCTTGTAGTCATCGATGTT
LOC_Os01g06670
Os.32879.1.S2_at--432--6831Chr01:3140955..3140979 (25 bp)
GTTTCAGACAATGCACTCCATGGTA
LOC_Os01g06670
Os.32879.1.S2_at--1138--6691Chr01:3140904..3140928 (25 bp)
GTTCTCCTCCGTGGGCTAAACATGT
LOC_Os01g06670
Os.32879.1.S2_at--641--7311Chr01:3140840..3140864 (25 bp)
GTGCTCTGCATGAACTCGAGTCATT
LOC_Os01g06670
Os.32879.1.S2_at--266--6591Chr01:3140785..3140809 (25 bp)
GATTCCACAGGAGTTAGCACAGCTA
LOC_Os01g06670
Os.32879.1.S2_at--1135--8051Chr01:3140717..3140741 (25 bp)
GGAGAATACCAGATTCACCCCAGTT
LOC_Os01g06670
Os.32879.1.S2_at--848--7151Chr01:3140660..3140684 (25 bp)
GTCTATGTGGGTTTCCATTGTCCAA
LOC_Os01g06670
Os.32879.1.S2_at--520--1691Chr01:3140611..3140635 (25 bp)
ACCAAGCTCACATCCTTCAGAGGAA
LOC_Os01g06670
Os.32879.1.S2_at--563--6791Chr01:3140574..3140598 (25 bp)
GTTATACTGTTCCTCTTTGTTGGAC
LOC_Os01g06670
Os.32879.1.S2_at--1103--7791Chr01:3140486..3140510 (25 bp)
GGTCCCAAGACAGCAGATTTCCGTT
LOC_Os01g06670
Os.32879.1.S2_at--278--631Chr01:3140409..3140433 (25 bp)
ATGCTTTAGTTACCACAGCTACGTT
LOC_Os01g06670
Target Sequence 
GAGGACCCTTGTAGTCATCGATGTTTCAGACAATGCACTCCATGGTAGCATTCCCAAGTCAATTGGAGAGCTCGTTCTCC
TCCGTGGGCTAAACATGTCACATAATGCCCTCACAGGACCAATTCCATCTCAGCTTGGTGCTCTGCATGAACTCGAGTCA
TTGGACCTCTCATCAAATGATCTTTCAGGGGAGATTCCACAGGAGTTAGCACAGCTACACTTCCTCTCAGTGCTGAACCT
GTCCTACAACGGTTTGGTTGGGAGAATACCAGATTCACCCCAGTTCTCGAACAATCTCTCCTATCTGGGGAACATTGGTC
TATGTGGGTTTCCATTGTCCAAGGAATGCAGCAACATGACAACACCACCAAGCTCACATCCTTCAGAGGAAAAACATGTG
GATGTTATACTGTTCCTCTTTGTTGGACTTGGAGTTGGCATCGGGTTTGCAGTTATAATCGTTGTGACATGGGGAATCCG
CATCAAGAAAAGGTCCCAAGACAGCAGATTTCCGTTTTGGAAAAAAGTTCTCTGTATGTAAGATTACTTGTTAGCTGAAA
AAACGTATATGCTTTAGTTACCACAGCTACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32879.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis