Browse Element(s) Details


Os.32938.1.S1_at

Description gb:AK102319.1
DB_XREF= gi:32987528
TID=Os.32938.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32938 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein phosphatase 2C-like protein (B1040D09.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033090G17, full insert sequence.
FL= gb:AK102319.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g431002/11protein phosphatase 2C, putative, expressed
LOC_Os07g258901/11Sumoylation ligase E3, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43050Os.37641.1.S1_at11/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43050Os.37641.2.S1_x_at10/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43060Os.33198.1.S1_at11/111+24895849..24898383expressed protein
LOC_Os01g43060OsAffx.13489.1.S1_at1/111+24895849..24898383expressed protein
LOC_Os01g43070Os.1500.2.S1_x_at10/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43070Os.1500.1.S1_at8/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43080Os.52056.1.S1_at11/111+24902574..24903707exonuclease family protein, expressed
LOC_Os01g43090Os.45885.1.S1_s_at11/111+24906478..24908925Auxin-induced protein PCNT115, putative, expressed
LOC_Os01g43100Os.32938.1.S1_x_at6/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43100Os.32938.1.S1_at2/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43110OsAffx.9127.2.S1_x_at11/111+24919360..24923065hypothetical protein
LOC_Os01g43120Os.26991.1.S1_x_at11/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120Os.52507.1.S1_at11/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120Os.26517.1.S1_at1/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43130Os.47953.1.S1_at11/111+24929073..24932332DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43140Os.41251.1.A1_at6/111+24938537..24942334Lipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0015071molecular_functionprotein phosphatase type 2C activity
GO:0019789molecular_functionSUMO ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32938.1.S1_at--373--631Chr01:24916133..24916157 (25 bp)
ATGCTGCCTCGTCTAGTGAGCGAAG
LOC_Os01g43100
Os.32938.1.S1_at--1095--4771Chr01:24916135..24916159 (25 bp)
GCTGCCTCGTCTAGTGAGCGAAGTT
LOC_Os01g43100
Os.32938.1.S1_at--119--4471Chr01:24916138..24916162 (25 bp)
GCCTCGTCTAGTGAGCGAAGTTGAT
NONE
Os.32938.1.S1_at--223--7331Chr01:24916148..24916172 (25 bp)
GTGAGCGAAGTTGATTTCTTCTGTT
NONE
Os.32938.1.S1_at--327--10212Chr07:14865362..14865467 (25 bp)
TATTTCTCTTGTTCATTTTATCATC
LOC_Os07g25890
Os.32938.1.S1_at--205--9531Chr01:24916178..24916202 (25 bp)
TCTCTTGTTCATTTTATCATCTTAA
NONE
Os.32938.1.S1_at--1020--10151Chr01:24916192..24916216 (25 bp)
TATCATCTTAATCTGGAGTGCTGGC
NONE
Os.32938.1.S1_at--935--3551Chr01:24916195..24916219 (25 bp)
CATCTTAATCTGGAGTGCTGGCATC
NONE
Os.32938.1.S1_at--19--9571Chr01:24916197..24916221 (25 bp)
TCTTAATCTGGAGTGCTGGCATCAA
NONE
Os.32938.1.S1_at--573--3051Chr01:24916201..24916225 (25 bp)
AATCTGGAGTGCTGGCATCAATCAC
NONE
Os.32938.1.S1_at--184--3911Chr01:24916204..24916228 (25 bp)
CTGGAGTGCTGGCATCAATCACGGT
NONE
Target Sequence 
ATGCTGCCTCGTCTAGTGAGCGAAGTTGATTTCTTCTGTTCTATTTCTCTTGTTCATTTTATCATCTTAATCTGGAGTGC
TGGCATCAATCACGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis