Browse Element(s) Details


Os.32983.1.A1_at

Description gb:AK102184.1
DB_XREF= gi:32987393
TID=Os.32983.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 5, K9B18.5 (P0710F09.38), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086M16, full insert sequence.
FL= gb:AK102184.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g229506/11Adenylate kinase isoenzyme 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22890OsAffx.16366.1.S1_at11/117+12900310..12902163hypothetical protein
LOC_Os07g22890OsAffx.16366.2.S1_s_at11/117+12900310..12902163hypothetical protein
LOC_Os07g22900NANA7+12903581..12904048hypothetical protein
LOC_Os07g22910Os.27775.1.A1_at3/117+12904553..12906955hypothetical protein
LOC_Os07g22920OsAffx.22238.2.S1_at9/117+12908385..12910176hypothetical protein
LOC_Os07g22920OsAffx.22238.1.S1_at2/117+12908385..12910176hypothetical protein
LOC_Os07g22930Os.9212.1.S1_at11/117+12914751..12922613Granule-bound starch synthase 1b, chloroplast precursor, putative, expressed
LOC_Os07g22940OsAffx.10041.1.S1_at11/117+12923824..12924198hypothetical protein
LOC_Os07g22950Os.32983.2.A1_at11/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22950Os.32983.2.A1_x_at11/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22950Os.32983.1.A1_at6/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22950Os.4978.1.S2_at1/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22960OsAffx.15476.1.S1_at1/117+12929985..12948389retrotransposon protein, putative, unclassified
LOC_Os07g22970OsAffx.5782.1.S1_at1/117+12952278..12956731hypothetical protein
LOC_Os07g22970OsAffx.8326.1.S1_x_at1/117+12952278..12956731hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32983.1.A1_at--211--551Chr07:12928629..12928653 (25 bp)
ATCCCGGAGCTGAGCTGTTTCCTCT
LOC_Os07g22950
Os.32983.1.A1_at--707--10671Chr07:12928655..12928679 (25 bp)
TTCCTCTCTGGTAATGCTTATGCCT
LOC_Os07g22950
Os.32983.1.A1_at--50--10771Chr07:12928720..12928744 (25 bp)
TTGAGTTAGATCGTGCAGACATTGT
LOC_Os07g22950
Os.32983.1.A1_at--755--2651Chr07:12928745..12928769 (25 bp)
AAGCCTTTTTACGTATGCATGCCCA
LOC_Os07g22950
Os.32983.1.A1_at--91--651Chr07:12928759..12928783 (25 bp)
ATGCATGCCCAACCTTGGATCTCAG
LOC_Os07g22950
Os.32983.1.A1_at--400--8571NONE
TGGATCTCAGCACGCAATACGTTGT
NONE
Os.32983.1.A1_at--344--6831Chr07:12928844..12929241 (25 bp)
GTTTCATAGGGAATGTCTGGGTCCA
NONE
Os.32983.1.A1_at--423--9471NONE
TCTGGGTCCAGTTTGTTTCTCTATT
NONE
Os.32983.1.A1_at--323--431NONE
ATCATTACTTGTTTGCACCTGCTAA
NONE
Os.32983.1.A1_at--202--5091NONE
GCACCTGCTAATGGGATGTACTTAA
NONE
Os.32983.1.A1_at--889--2431Chr07:12928955..12928979 (25 bp)
AAAAGTGCTGATTTATTTTGCTGCT
LOC_Os07g22950
Target Sequence 
ATCCCGGAGCTGAGCTGTTTCCTCTCTTCCTCTCTGGTAATGCTTATGCCTGGTGAAAAAATGTTTTCTTTTTCTATGCT
GAATTTTGAATATTGAGTTAGATCGTGCAGACATTGTAAGCCTTTTTACGTATGCATGCCCAACCTTGGATCTCAGCACG
CAATACGTTGTGCTAAACGGGTTATGTGATGGGGGCATGCTGAATGTAAATTAGTAGTTTCATAGGGAATGTCTGGGTCC
AGTTTGTTTCTCTATTTCAAACTGAAATGTTATGTGACATCATTACTTGTTTGCACCTGCTAATGGGATGTACTTAAAGT
GATTGGCAAAAGTGCTGATTTATTTTGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32983.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis