Browse Element(s) Details


Os.33074.1.S1_at

Description gb:AK101850.1
DB_XREF= gi:32987059
TID=Os.33074.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33074 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033069K07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033069K07, full insert sequence.
FL= gb:AK101850.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0888010/11ES43, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08850OsAffx.28352.1.S1_at10/117+4583508..4588966hypothetical protein
LOC_Os07g08860OsAffx.5256.1.S1_at11/117+4591394..4593907D-mannose binding lectin family protein
LOC_Os07g08860OsAffx.15908.2.S1_x_at1/117+4591394..4593907D-mannose binding lectin family protein
LOC_Os07g08870OsAffx.28353.1.S1_at11/117+4594706..4595839hypothetical protein
LOC_Os07g08880Os.33074.1.S1_at10/117+4604998..4612898ES43, putative, expressed
LOC_Os07g08890Os.50622.1.S1_at10/117+4616966..4621054NB-ARC domain containing protein, expressed
LOC_Os07g08890OsAffx.21785.2.S1_at1/117+4616966..4621054NB-ARC domain containing protein, expressed
LOC_Os07g08890Os.53962.1.S1_at1/117+4616966..4621054NB-ARC domain containing protein, expressed
LOC_Os07g08900NANA7+4625686..4629259hypothetical protein
LOC_Os07g08910Os.1709.1.S1_x_at7/117+4629848..4633046retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g08920NANA7+4634078..4635811retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009791biological_processpost-embryonic development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0042156molecular_functionzinc-mediated transcriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33074.1.S1_at--433--8211NONE
GGAATGCTCTGATTGGTTTCACCCT
NONE
Os.33074.1.S1_at--489--6831Chr07:4611735..4611759 (25 bp)
GTTTCACCCTTCTTGCATTGGAATG
LOC_Os07g08880
Os.33074.1.S1_at--1119--10291Chr07:4611792..4611816 (25 bp)
TTTCTGCCAGAGCTGTACTGCGGAA
LOC_Os07g08880
Os.33074.1.S1_at--744--5211Chr07:4611834..4611858 (25 bp)
GAATTCTCATGAAGCTACAGCGCAA
LOC_Os07g08880
Os.33074.1.S1_at--523--6571Chr07:4612468..4612492 (25 bp)
GATTCATTGACGAGATACACCTGGA
LOC_Os07g08880
Os.33074.1.S1_at--455--2171Chr07:4612484..4612508 (25 bp)
ACACCTGGATGTACAAAGCCTTCTC
LOC_Os07g08880
Os.33074.1.S1_at--728--2651Chr07:4612499..4612523 (25 bp)
AAGCCTTCTCAAGTTGGTGTAATGC
LOC_Os07g08880
Os.33074.1.S1_at--632--2871Chr07:4612541..4612565 (25 bp)
AAGTGTGTGTGACCCACGACCACGA
LOC_Os07g08880
Os.33074.1.S1_at--1008--6011Chr07:4612564..4612588 (25 bp)
GAGAGTCCCTTCCTGTAATGTCAGT
LOC_Os07g08880
Os.33074.1.S1_at--190--5791Chr07:4612635..4612659 (25 bp)
GACGACACGACCTGTTGTTGTTGCA
LOC_Os07g08880
Os.33074.1.S1_at--403--951Chr07:4612725..4612749 (25 bp)
AGGACTCCCGTATGGATGTTATCAC
LOC_Os07g08880
Target Sequence 
GGAATGCTCTGATTGGTTTCACCCTTCTTGCATTGGAATGACTATTAAAGATGCAAAAAAACTAGAGCATTTTTTCTGCC
AGAGCTGTACTGCGGAAAATGGAAAGATGGCTGAGAATTCTCATGAAGCTACAGCGCAATCCGAAGAAAAGCAGGTGGAG
TCAAAAAGACGGAGAAGGTGACTGCCCCCCAGATTCATTGACGAGATACACCTGGATGTACAAAGCCTTCTCAAGTTGGT
GTAATGCTATTTATTTGTCATGGCAAGTGTGTGTGACCCACGACCACGAGAGTCCCTTCCTGTAATGTCAGTCGCATGGT
GTACATAAACTTTTCAACCTGAGACTGTTGTATTAGGAGACGACACGACCTGTTGTTGTTGCATGATGTTTTTAGCAGCG
TCAGAATTAGCATGGTAGAGTCGGGTGATGAAGCCCCTCGCGGGCATTAGGACTCCCGTATGGATGTTATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis