Browse Element(s) Details


Os.33145.1.S1_at

Description gb:AK101616.1
DB_XREF= gi:32986825
TID=Os.33145.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33145 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative S-receptor kinase (P0534A03.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033052G09, full insert sequence.
FL= gb:AK101616.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3657011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36520OsAffx.22562.1.S1_at11/117+21835300..21838224F-box domain containing protein
LOC_Os07g36530OsAffx.28781.1.S1_at11/117+21841734..21844044F-box domain containing protein
LOC_Os07g36544Os.10550.1.S1_at11/117+21844633..21849425D-mannose binding lectin family protein, expressed
LOC_Os07g36544Os.10550.1.S1_x_at11/117+21844633..21849425D-mannose binding lectin family protein, expressed
LOC_Os07g36560Os.30000.1.S1_at10/117+21853033..21855198Transferase family protein, expressed
LOC_Os07g36570Os.33145.1.S1_at11/117+21861415..21866821D-mannose binding lectin family protein, expressed
LOC_Os07g36580OsAffx.16585.1.S1_s_at11/117+21868352..21870747hypothetical protein
LOC_Os07g36580OsAffx.16585.1.S1_at9/117+21868352..21870747hypothetical protein
LOC_Os07g36580OsAffx.10158.1.S1_x_at1/117+21868352..21870747hypothetical protein
LOC_Os07g36590Os.32819.1.S1_at11/117+21875197..21881678KI domain interacting kinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33145.1.S1_at--72--2231Chr07:21861921..21861945 (25 bp)
ACAAGGAGGAGTCCTACTCCGCCAA
LOC_Os07g36570
Os.33145.1.S1_at--395--7111Chr07:21861886..21861910 (25 bp)
GTCACCATGCTCCAAGGCAGGTAGG
LOC_Os07g36570
Os.33145.1.S1_at--623--7291Chr07:21861860..21861884 (25 bp)
GTGCGTATACCACTAAGTACGTCTT
LOC_Os07g36570
Os.33145.1.S1_at--713--2751Chr07:21861672..21861696 (25 bp)
AAGAAACACGCGCTCTTCTCTCGAT
LOC_Os07g36570
Os.33145.1.S1_at--516--8051Chr07:21861627..21861651 (25 bp)
GGAGATGTACTGTGTGTTCCACATG
LOC_Os07g36570
Os.33145.1.S1_at--329--10271Chr07:21861565..21861589 (25 bp)
TTTGCTTTTGCTTTGTACATGGCCC
LOC_Os07g36570
Os.33145.1.S1_at--779--9871Chr07:21861550..21861574 (25 bp)
TACATGGCCCCAATTTTGTTACTGC
LOC_Os07g36570
Os.33145.1.S1_at--272--10371Chr07:21861508..21861532 (25 bp)
TTTTTACACTCAGTTCCAGTTCATT
LOC_Os07g36570
Os.33145.1.S1_at--948--6851Chr07:21861472..21861496 (25 bp)
GTTTGTGTAATCCATCATCACTGTA
LOC_Os07g36570
Os.33145.1.S1_at--558--2511Chr07:21861440..21861464 (25 bp)
AACTATTTAACCAGGACGCGCCGAT
LOC_Os07g36570
Os.33145.1.S1_at--330--951Chr07:21861428..21861452 (25 bp)
AGGACGCGCCGATTAATTGGGCCGC
LOC_Os07g36570
Target Sequence 
ACAAGGAGGAGTCCTACTCCGCCAACGACCTCACCGTCACCATGCTCCAAGGCAGGTAGGAGTGCGTATACCACTAAGTA
CGTCTTAAAATATAGCAATTTAGAACTAGATTGGATATATTCTAGTCCAATAAATCTAGATAACCATTTTTTTCAGATTT
ATTAAATTAAGATATATTTTTTAAATTATTATATTTTGGAACGGAAGGAGCAGTAGGAGGTTGGGTGTACAAAACTGTAC
ATAGACACGAAGAAACACGCGCTCTTCTCTCGATCGGGTGGACGATCGAGCTAGGGAGATGTACTGTGTGTTCCACATGT
GTTGGGTGATTTGATAGCTCTGGGTGTAGAGATTGGTTTGCTTTTGCTTTGTACATGGCCCCAATTTTGTTACTGCCGGT
TCCGGTTTTTTTTTTTTTACACTCAGTTCCAGTTCATTGATTGGTTGAAGTTTGTGTAATCCATCATCACTGTACAAACA
AAACTATTTAACCAGGACGCGCCGATTAATTGGGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33145.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis