Browse Element(s) Details


Os.33221.1.S1_at

Description gb:AK101311.1
DB_XREF= gi:32986520
TID=Os.33221.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33221 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0481E12.12 (P0481E12.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033O22, full insert sequence.
FL= gb:AK101311.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5439011/11S4 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54320OsAffx.23786.1.S1_at10/111+31589851..31590054hypothetical protein
LOC_Os01g54330OsAffx.11600.1.S1_at10/111+31593548..31595101hypothetical protein
LOC_Os01g54340Os.40424.1.S1_at11/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54340Os.12793.1.S1_x_at10/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54350Os.2128.1.S1_at11/111+31602090..31606233protein kinase, putative, expressed
LOC_Os01g54360OsAffx.23787.2.S1_x_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.1.S1_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.2.S1_at2/111+31607700..31610060hypothetical protein
LOC_Os01g54370Os.2131.1.S1_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54370Os.2131.1.S1_s_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54380Os.2132.1.S1_s_at11/111+31613517..31614882pentatricopeptide, putative, expressed
LOC_Os01g54390Os.33221.1.S1_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54390Os.33221.2.S1_x_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54400Os.2135.1.S1_at11/111+31625790..31627032VQ motif family protein, expressed
LOC_Os01g54410OsAffx.11602.1.S1_at11/111+31629606..31629885hypothetical protein
LOC_Os01g54420Os.32564.1.S2_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54420Os.32564.1.S1_at11/111+31635092..31639733dynamin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33221.1.S1_at--428--7971Chr01:31618898..31618922 (25 bp)
GGATCTCTCAAGATTACTGACTCAA
LOC_Os01g54390
Os.33221.1.S1_at--1067--9891Chr01:31618912..31619297 (25 bp)
TACTGACTCAAATGAACGGACTCAA
LOC_Os01g54390
Os.33221.1.S1_at--538--10351Chr01:31619302..31619326 (25 bp)
TTTTTTAACTGCAACTTCCGTGAGG
LOC_Os01g54390
Os.33221.1.S1_at--534--10551Chr01:31619391..31619415 (25 bp)
TTCATTACCTAACTTTGCCTACTGC
LOC_Os01g54390
Os.33221.1.S1_at--684--9191Chr01:31619406..31619430 (25 bp)
TGCCTACTGCATAACGTAGCCTATT
LOC_Os01g54390
Os.33221.1.S1_at--640--6971Chr01:31619421..31619445 (25 bp)
GTAGCCTATTCTATATTCATATGAT
LOC_Os01g54390
Os.33221.1.S1_at--26--711Chr01:31619441..31619465 (25 bp)
ATGATCAAGTGCTACCATGGCCAAC
LOC_Os01g54390
Os.33221.1.S1_at--572--5531Chr01:31619469..31619493 (25 bp)
GAAACATGTGACTTCGATTATGACA
LOC_Os01g54390
Os.33221.1.S1_at--989--5691Chr01:31619531..31619555 (25 bp)
GACTAGTCATATATTCAGCGCCCTT
LOC_Os01g54390
Os.33221.1.S1_at--1022--91Chr01:31619543..31619567 (25 bp)
ATTCAGCGCCCTTTTAATGCTAAAA
LOC_Os01g54390
Os.33221.1.S1_at--1151--5611Chr01:31619580..31619604 (25 bp)
GACAACGGCTATTCTTTGTATCACA
LOC_Os01g54390
Target Sequence 
GGATCTCTCAAGATTACTGACTCAAATGAACGGACTCAAATCCTTTTTTAACTGCAACTTCCGTGAGGNCTTGTTCTGCT
CTGAGACCAAAAAACAAGGTTTGTGTTTTAAAACCANAAGGAGTTTCGCAAATTCATTACCTAACTTTGCCTACTGCATA
ACGTAGCCTATTCTATATTCATATGATCAAGTGCTACCATGGCCAACCATGAAACATGTGACTTCGATTATGACAAGATG
GAGGCAAGCTGTTTATTGGGAAAACTGATGACGACTAGTCATATATTCAGCGCCCTTTTAATGCTAAAAAGCTTGACAAA
TGACAACGGCTATTCTTTGTATCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis