Browse Element(s) Details


Os.33221.2.S1_x_at

Description gb:NM_191200.1
DB_XREF= gi:34909483
GEN=P0481E12.12
TID=Os.33221.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33221 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0481E12.12 (P0481E12.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0481E12.12 (P0481E12.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5439011/11S4 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54320OsAffx.23786.1.S1_at10/111+31589851..31590054hypothetical protein
LOC_Os01g54330OsAffx.11600.1.S1_at10/111+31593548..31595101hypothetical protein
LOC_Os01g54340Os.40424.1.S1_at11/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54340Os.12793.1.S1_x_at10/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54350Os.2128.1.S1_at11/111+31602090..31606233protein kinase, putative, expressed
LOC_Os01g54360OsAffx.23787.2.S1_x_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.1.S1_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.2.S1_at2/111+31607700..31610060hypothetical protein
LOC_Os01g54370Os.2131.1.S1_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54370Os.2131.1.S1_s_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54380Os.2132.1.S1_s_at11/111+31613517..31614882pentatricopeptide, putative, expressed
LOC_Os01g54390Os.33221.1.S1_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54390Os.33221.2.S1_x_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54400Os.2135.1.S1_at11/111+31625790..31627032VQ motif family protein, expressed
LOC_Os01g54410OsAffx.11602.1.S1_at11/111+31629606..31629885hypothetical protein
LOC_Os01g54420Os.32564.1.S2_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54420Os.32564.1.S1_at11/111+31635092..31639733dynamin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33221.2.S1_x_at--813--6051Chr01:31616479..31616503 (25 bp)
GATGTTTTCCACACCAATTTTCTTA
LOC_Os01g54390
Os.33221.2.S1_x_at--457--3131Chr01:31616494..31616518 (25 bp)
AATTTTCTTACTCCACCTATAGTGA
LOC_Os01g54390
Os.33221.2.S1_x_at--321--3751Chr01:31617031..31617055 (25 bp)
CTCAGGTCCTTGTTGATCCTGAACT
LOC_Os01g54390
Os.33221.2.S1_x_at--603--6371Chr01:31617045..31617069 (25 bp)
GATCCTGAACTTGTTGACTATCTGA
LOC_Os01g54390
Os.33221.2.S1_x_at--59--5711Chr01:31617060..31617084 (25 bp)
GACTATCTGACTTCCACACTTGAAA
LOC_Os01g54390
Os.33221.2.S1_x_at--1138--2131Chr01:31617469..31617493 (25 bp)
ACAGATTCCTTTGCTTGCTCTAGAA
LOC_Os01g54390
Os.33221.2.S1_x_at--128--8991Chr01:31617496..31617627 (25 bp)
TGAACCACCAAGGACCAAGTCATTT
LOC_Os01g54390
Os.33221.2.S1_x_at--752--3071Chr01:31617638..31617662 (25 bp)
AATCATCACTCAGGGTTGATGCCCT
LOC_Os01g54390
Os.33221.2.S1_x_at--533--2431Chr01:31617679..31617703 (25 bp)
AAAATCTCACGTACAAAGCTTGCTA
LOC_Os01g54390
Os.33221.2.S1_x_at--515--1551Chr01:31617695..31617903 (25 bp)
AGCTTGCTAGCTTGATCAGTGCTGG
LOC_Os01g54390
Os.33221.2.S1_x_at--522--6271Chr01:31617905..31617929 (25 bp)
GATGTCCGTGTGAATTGGTCACCAG
LOC_Os01g54390
Target Sequence 
GATGTTTTCCACACCAATTTTCTTACTCCACCTATAGTGAAGGAGTGCATGCTGGCAATTGAGAAGTTAGCAGACATCAA
AGCGGTAGCACAGGGGGGCTACCCACAGGGAGAGAGAGGTGCTCAGGTCCTTGTTGATCCTGAACTTGTTGACTATCTGA
CTTCCACACTTGAAAAGGTGGGGAAAGTTGGAGTTTCATGCACACAGATTCCTTTGCTTGCTCTAGAATATGAACCACCA
AGGACCAAGTCATTTAAAACTGTAGAATCATCACTCAGGGTTGATGCCCTGGGTAGTGCAGGATTTAAAATCTCACGTAC
AAAGCTTGCTAGCTTGATCAGTGCTGGGGATGTCCGTGTGAATTGGTCACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33221.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis