Browse Element(s) Details


Os.33275.1.S1_at

Description gb:AK101126.1
DB_XREF= gi:32986335
TID=Os.33275.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33275 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NLI-interacting factor (OSJNBb0096M04.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025N10, full insert sequence.
FL= gb:AK101126.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6330011/11NLI interacting factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63260Os.44933.1.S1_at11/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.44933.2.S1_at10/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.44933.2.S1_x_at10/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.22353.3.S1_x_at2/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63270Os.27955.2.S1_x_at11/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.2.S1_at11/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.1.S1_at10/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.1.S2_at9/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63280Os.10657.1.S1_at11/113+35705897..35707930regulatory protein, putative, expressed
LOC_Os03g63290Os.25462.1.S1_at11/113+35708735..35711180oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g63300Os.33275.1.S1_at11/113+35711634..35716393NLI interacting factor, putative, expressed
LOC_Os03g63300Os.26818.2.S1_at1/113+35711634..35716393NLI interacting factor, putative, expressed
LOC_Os03g63310Os.44934.1.S1_at11/113+35716842..35720269Cytochrome P450 71E1, putative, expressed
LOC_Os03g63320OsAffx.10404.1.S1_at11/113+35724564..35725334SAM domain family protein, expressed
LOC_Os03g63330Os.46611.1.S1_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.46611.1.S1_x_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.27606.1.S1_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.5265.1.S1_x_at1/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63350OsAffx.13592.1.S1_at11/113+35738193..35739308hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000775cellular_componentchromosome, pericentric region
GO:0005634cellular_componentnucleus
GO:0005694cellular_componentchromosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33275.1.S1_at--260--10871Chr03:35713214..35713238 (25 bp)
TTGGCTCGTGTGGTCATTGTTGATA
LOC_Os03g63300
Os.33275.1.S1_at--524--4851Chr03:35712149..35712173 (25 bp)
GTTCCAATTAGACAACGGCGTCCCT
LOC_Os03g63300
Os.33275.1.S1_at--908--8311Chr03:35712133..35712157 (25 bp)
GGCGTCCCTATTGAAAGTTGGTTTG
LOC_Os03g63300
Os.33275.1.S1_at--1033--2791Chr03:35712045..35712069 (25 bp)
AAGATGTCCGGCCATGTATTGCAAG
LOC_Os03g63300
Os.33275.1.S1_at--231--1751Chr03:35711987..35712011 (25 bp)
ACCTTCTCTCTCTATGCACTTTTAG
LOC_Os03g63300
Os.33275.1.S1_at--330--7491Chr03:35711854..35711878 (25 bp)
GTGGTGAATTATCTGTATCTTTGCC
LOC_Os03g63300
Os.33275.1.S1_at--881--10271Chr03:35711835..35711859 (25 bp)
TTTGCCCTGGTGTAATCCTGTGTAC
LOC_Os03g63300
Os.33275.1.S1_at--443--3691Chr03:35711750..35711774 (25 bp)
CTAGGGAATCCTGTGTTAGCATTAA
LOC_Os03g63300
Os.33275.1.S1_at--76--691Chr03:35711710..35711734 (25 bp)
ATGAGAGTTGGCATGGCCTTCTTGT
LOC_Os03g63300
Os.33275.1.S1_at--912--8431Chr03:35711696..35711720 (25 bp)
GGCCTTCTTGTTGTGCATTGCAGAT
LOC_Os03g63300
Os.33275.1.S1_at--301--291Chr03:35711653..35711677 (25 bp)
ATAGATTATCCTCTTGGTCCAGTGA
LOC_Os03g63300
Target Sequence 
TTGGCTCGTGTGGTCATTGTTGATAATTCACNACAGGCCTTTGGGTTCCAATTAGACAACGGCGTCCCTATTGAAAGTTG
GTTTGATGATCGTAATGACAGAGAACTCCTAACATTACTTCCATTTTTGCAAAGTTTGGTTGGGGTGGAAGATGTCCGGC
CATGTATTGCAAGGAAGTTCAACCTTCGTGAGAAGGTTGCCACTGCACCTTCTCTCTCTATGCACTTTTAGATGATCAAA
TCATTTTCTGGGATATAGAGAAATAAATTGAAGTGGCAGTTGTACTCTATAGAGAAGGAAAACATGGGCAGTTGTGTGAA
TTGCTGGAGAGGACCCAAGGTGGTGAATTATCTGTATCTTTGCCCTGGTGTAATCCTGTGTACTTGGAACCCATAAAATC
GTGTAAAATATGCTCTGTTGTACTAATATTTATACCTGAAGAACTAGGGAATCCTGTGTTAGCATTAAGTTAAAATACTC
TACATGAGAGTTGGCATGGCCTTCTTGTTGTGCATTGCAGATAGAACTGCTCAGCACACAATAGATTATCCTCTTGGTCC
AGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis