Browse Element(s) Details


Os.33350.1.S1_at

Description gb:AK100880.1
DB_XREF= gi:32986089
TID=Os.33350.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33350 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1723_B06.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127F23, full insert sequence.
FL= gb:AK100880.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g541902/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54150OsAffx.22461.2.S1_x_at11/111+31466273..31469303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54150OsAffx.22461.3.S1_x_at3/111+31466273..31469303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54160NANA1+31471880..31477780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54170OsAffx.21631.1.S1_at11/111+31484241..31485073expressed protein
LOC_Os01g54180OsAffx.21629.1.S1_x_at9/111+31489987..31492000hypothetical protein
LOC_Os01g54180OsAffx.16924.1.S1_x_at8/111+31489987..31492000hypothetical protein
LOC_Os01g54180OsAffx.21629.2.S1_x_at2/111+31489987..31492000hypothetical protein
LOC_Os01g54190Os.34819.2.S1_s_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_a_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.42141.1.S1_x_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_s_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_x_at9/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.1.S1_at9/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.3.S1_x_at7/111+31492537..31495621expressed protein
LOC_Os01g54190OsAffx.5404.1.S1_at6/111+31492537..31495621expressed protein
LOC_Os01g54190Os.33350.1.S1_x_at3/111+31492537..31495621expressed protein
LOC_Os01g54190Os.34819.2.S1_x_at2/111+31492537..31495621expressed protein
LOC_Os01g54190Os.33350.1.S1_at2/111+31492537..31495621expressed protein
LOC_Os01g54200Os.55324.1.S1_at5/111+31497377..31497561NA
LOC_Os01g54210Os.27911.2.S1_at11/111+31507044..31509304GATA zinc finger family protein, expressed
LOC_Os01g54210Os.27911.1.S1_at11/111+31507044..31509304GATA zinc finger family protein, expressed
LOC_Os01g54220OsAffx.22940.2.S1_s_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.5.S1_x_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.1.S1_s_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.5.S1_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220Os.35344.3.S1_x_at10/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220Os.35344.18.S1_x_at10/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.3.S1_x_at9/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.2.S1_at8/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.31552.2.S1_at1/111+31514122..31521674transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33350.1.S1_at--637--10311Chr07:12651651..12651675 (25 bp)
TTTCTTATTGGCATAGATCATTTAA
NONE
Os.33350.1.S1_at--898--2391Chr07:12651624..12651648 (25 bp)
AAACTTGTTGCTAATGCTATTTCAT
NONE
Os.33350.1.S1_at--275--193Chr01:31495174..31495198 (25 bp)
ATTTCATATAAATGTGCTATCACTG
LOC_Os01g54190
Os.33350.1.S1_at--55--7333Chr01:31495187..31495211 (25 bp)
GTGCTATCACTGTTTTAGATACATG
LOC_Os01g54190
Os.33350.1.S1_at--108--6791Chr07:12651555..12651579 (25 bp)
GTTTTGAAATAAAGCTCGCCTACGT
NONE
Os.33350.1.S1_at--221--8951Chr07:12651551..12651575 (25 bp)
TGAAATAAAGCTCGCCTACGTAATT
NONE
Os.33350.1.S1_at--772--2691Chr07:12651544..12651568 (25 bp)
AAGCTCGCCTACGTAATTAATCTTA
NONE
Os.33350.1.S1_at--134--3151Chr07:12651530..12651554 (25 bp)
AATTAATCTTACCTCTTTTGTGCAA
NONE
Os.33350.1.S1_at--914--3051Chr07:12651526..12651550 (25 bp)
AATCTTACCTCTTTTGTGCAATCTC
NONE
Os.33350.1.S1_at--680--9971Chr07:12651521..12651545 (25 bp)
TACCTCTTTTGTGCAATCTCAGGAT
NONE
Os.33350.1.S1_at--562--8691Chr07:12651512..12651536 (25 bp)
TGTGCAATCTCAGGATTTGCAAGTC
NONE
Target Sequence 
TTTCTTATTGGCATAGATCATTTAAATAAACTTGTTGCTAATGCTATTTCATATAAATGTGCTATCACTGTTTTAGATAC
ATGTACATAAAATGTTGTTTTGAAATAAAGCTCGCCTACGTAATTAATCTTACCTCTTTTGTGCAATCTCAGGATTTGCA
AGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis