Browse Element(s) Details


Os.33406.1.A1_x_at

Description gb:NM_183526.1
DB_XREF= gi:34894179
GEN=P0439B06.11
TID=Os.33406.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33406 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative phosphoenolpyruvate carboxylase 2 (pepcase) (cp28) (P0439B06.11), mRNA.
PROD=putative phosphoenolpyruvate carboxylase 2(pepcase) (cp28)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0205011/11Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g542301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02000OsAffx.23051.2.S1_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02000OsAffx.23051.1.S1_x_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02010Os.56224.1.S1_at11/111+540227..541297expressed protein
LOC_Os01g02020Os.1637.1.S1_at10/111+545947..549427acetyl-CoA acetyltransferase, cytosolic 2, putative, expressed
LOC_Os01g02040Os.11832.1.S1_at11/111+550827..554817transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g02050Os.49998.1.S1_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g02050Os.33406.1.A1_x_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g02060Os.12560.1.S1_s_at11/111+573291..576371Leucine Rich Repeat family protein, expressed
LOC_Os01g02070OsAffx.22936.1.S1_at9/111+582765..583247pectinesterase inhibitor domain containing protein
LOC_Os01g02080Os.35815.1.S1_at11/111+583225..584558peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os01g02090Os.1644.1.S1_at11/111+585671..590539expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006099biological_processtricarboxylic acid cycle
GO:0008964molecular_functionphosphoenolpyruvate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33406.1.A1_x_at--546--8651Chr01:559650..559674 (25 bp)
TGGGCTACCTCAACATCGGCAGCCG
LOC_Os01g02050
Os.33406.1.A1_x_at--1029--5831Chr01:559429..559453 (25 bp)
GACCTCATCGAGATGGTGGTGGCCA
LOC_Os01g02050
Os.33406.1.A1_x_at--1153--871Chr01:559390..559414 (25 bp)
ATGGCCAAGCACTACGACGACGTGC
LOC_Os01g02050
Os.33406.1.A1_x_at--1083--1492Chr01:31525481..31525505 (25 bp)
AGCACTACGACGACGTGCTGGTGCA
LOC_Os01g54230
Os.33406.1.A1_x_at--1054--3971Chr01:559287..559311 (25 bp)
CGGTGAGCGGTCACAAGAAGCTGTC
LOC_Os01g02050
Os.33406.1.A1_x_at--705--7091Chr01:559278..559302 (25 bp)
GTCACAAGAAGCTGTCCGCCAACAA
LOC_Os01g02050
Os.33406.1.A1_x_at--1156--2191Chr01:559257..559281 (25 bp)
ACAACCGCAGCCTGCGGAAGCTGAT
LOC_Os01g02050
Os.33406.1.A1_x_at--563--2691Chr01:559240..559264 (25 bp)
AAGCTGATCGACAGCAGGCTCACGT
LOC_Os01g02050
Os.33406.1.A1_x_at--695--9351Chr01:559233..559257 (25 bp)
TCGACAGCAGGCTCACGTACCTCAA
LOC_Os01g02050
Os.33406.1.A1_x_at--1055--9711Chr01:559212..559236 (25 bp)
TCAACCCCATGAACATGCTCCAGGT
LOC_Os01g02050
Os.33406.1.A1_x_at--63--8971Chr01:559203..559227 (25 bp)
TGAACATGCTCCAGGTCGAGGTCCT
LOC_Os01g02050
Target Sequence 
TGGGCTACCTCAACATCGGCAGCCGCCCCGCGAAGCGCAGGACCACGCCGGGGATCTCCAACCTTCGCGCCATCCCCTGG
GTGTTCGCGTGGACGCAGACGCGGCTGGTGCTCCCGGCGTGGCTCGGCGTGGGGCGCGGNCTNCAGGACGCCTGCGACAA
GGGCCACACCCACGAGCTCCGCGCCATGTACGAGGAGTGGCCCTTCTTCCAGTCCACGGTGGACCTCATCGAGATGGTGG
TGGCCAAGGCGGACGCGCCCATGGCCAAGCACTACGACGACGTGCTGGTGCACGACGCGGGGCGGCGGNCGCTCGGGGCG
GAGCTCCGGCAGGAGCTGGCGCGGACGGAGAACTGCGTGCTGGCGGTGAGCGGTCACAAGAAGCTGTCCGCCAACAACCG
CAGCCTGCGGAAGCTGATCGACAGCAGGCTCACGTACCTCAACCCCATGAACATGCTCCAGGTCGAGGTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33406.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis