Browse Element(s) Details


Os.33440.1.S1_at

Description gb:AK100563.1
DB_XREF= gi:32985772
TID=Os.33440.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0682B08.20 (P0682B08.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104I21, full insert sequence.
FL= gb:AK100563.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1954811/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19490Os.6999.1.S1_at11/111+11061634..11065552pentatricopeptide, putative, expressed
LOC_Os01g19500NANA1+11068258..11068569hypothetical protein
LOC_Os01g19510Os.31529.2.A1_at3/111+11072489..11072927hypothetical protein
LOC_Os01g19529Os.23685.1.S1_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.2.S1_x_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.1.S1_x_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.2.S1_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19548Os.33440.1.S1_at11/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19548Os.51902.1.S1_at11/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19548Os.57167.1.S1_x_at5/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19570OsAffx.11116.1.S1_at11/111+11091513..11091908hypothetical protein
LOC_Os01g19580OsAffx.11117.1.S1_at11/111+11092969..11095341hypothetical protein
LOC_Os01g19590Os.45976.1.S1_at2/111+11096797..11099398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19590Os.45976.1.S1_x_at1/111+11096797..11099398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19600Os.46306.1.S1_x_at1/111+11101997..11105326transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19610Os.43094.1.S1_at10/111+11106590..11110321expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33440.1.S1_at--639--1291Chr01:11086401..11086425 (25 bp)
AGATCCTTCGCTATGGTATCATCTC
LOC_Os01g19548
Os.33440.1.S1_at--1158--7851Chr01:11086387..11086411 (25 bp)
GGTATCATCTCATAAGTCATAGCGA
LOC_Os01g19548
Os.33440.1.S1_at--1113--10731Chr01:11086338..11086362 (25 bp)
TTGACGCAGGGTGGTTCTCAGGAAA
LOC_Os01g19548
Os.33440.1.S1_at--825--2231Chr01:11086275..11086299 (25 bp)
AAATTGATGTCAAGCAGCCCACCCA
LOC_Os01g19548
Os.33440.1.S1_at--751--1811Chr01:11086255..11086279 (25 bp)
ACCCAGCAGCACTTTAAGCACTAAC
LOC_Os01g19548
Os.33440.1.S1_at--624--6811Chr01:11085982..11086006 (25 bp)
GTTTAGATTAACTGGTAGCTCCTAC
LOC_Os01g19548
Os.33440.1.S1_at--524--9211Chr01:11085963..11085987 (25 bp)
TCCTACCTTACTCTCGAATTAGCTT
LOC_Os01g19548
Os.33440.1.S1_at--1098--1531Chr01:11085943..11085967 (25 bp)
AGCTTCAAAATGTTTCCCTTGCCAG
LOC_Os01g19548
Os.33440.1.S1_at--540--3131Chr01:11085914..11085938 (25 bp)
AATTTTCTTCGATTTACTCCGTGCA
LOC_Os01g19548
Os.33440.1.S1_at--340--7031Chr01:11085870..11085894 (25 bp)
GTACATGCACACGTTTAGTTCTATT
LOC_Os01g19548
Os.33440.1.S1_at--687--10271Chr01:11085846..11085870 (25 bp)
TTTGCACAGCTTAAGATCCATTTTT
LOC_Os01g19548
Target Sequence 
AGATCCTTCGCTATGGTATCATCTCATAAGTCATAGCGAGTGTCACGGACAATTTGTTTGGTGTTGACGCAGGGTGGTTC
TCAGGAAAACCCTTTCAGTTGGAGGTCCTTGAAATGGCTGGAGATGAAATTGATGTCAAGCAGCCCACCCAGCAGCACTT
TAAGCACTAACAAGTTATAATCATGGCTGAAAATGAACTGAAGGATGATGGTGTTAGGTTGCAAAATCGTTGGAAGACGG
GACACTGGGATATGAAGGAGCTTGATGCTAGCATGAATATGCTGCAAAGGGTGGGAGCTCGGTGCTTTACCCACGCAATC
ACTAACAAGCCAGGTGGAATTACATCCATTCAGAACTTGGTGGATGTGATGGATTCAGTTGCATGCAGGGCCTGACAGTT
GAGGTGGACGATTAGTCATGTTTAGATTAACTGGTAGCTCCTACCTTACTCTCGAATTAGCTTCAAAATGTTTCCCTTGC
CAGATTGAATTTTCTTCGATTTACTCCGTGCAATATATATCAACGTGTTTTGTACATGCACACGTTTAGTTCTATTTTGC
ACAGCTTAAGATCCATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis