Browse Element(s) Details


Os.33584.1.S1_at

Description gb:AK100021.1
DB_XREF= gi:32985230
TID=Os.33584.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.33584 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013145H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145H02, full insert sequence.
FL= gb:AK100021.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g016103/11GDP-mannose transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01570OsAffx.27394.1.S1_at4/118+328895..331475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g01580OsAffx.16778.1.S1_at11/118+335868..340386NB-ARC domain containing protein
LOC_Os08g01590Os.23131.1.S1_at11/118+345740..347482expressed protein
LOC_Os08g01590OsAffx.29825.1.S1_x_at2/118+345740..347482expressed protein
LOC_Os08g01600OsAffx.28980.1.S1_at11/118+350768..354209glycoside hydrolase family 28 protein, putative
LOC_Os08g01610Os.18706.1.S1_x_at10/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_x_at7/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.18706.1.S1_at6/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_at3/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01620Os.7321.1.S1_at11/118+361414..364631Shwachman-Bodian-Diamond syndrome protein homolog, putative, expressed
LOC_Os08g01630Os.49890.1.S1_at11/118+365110..367507DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os08g01640Os.49986.1.S1_at11/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01640Os.52705.1.S1_at3/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01650Os.53118.1.S1_at9/118+374960..377639Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01660Os.7391.1.S1_x_at11/118+377753..381899Mago nashi protein homolog, putative, expressed
LOC_Os08g01660Os.7391.1.S1_at11/118+377753..381899Mago nashi protein homolog, putative, expressed
LOC_Os08g01670Os.5834.1.S1_at11/118+383315..384849pectinesterase inhibitor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015784biological_processGDP-mannose transport
GO:0005794cellular_componentGolgi apparatus
GO:0016020cellular_componentmembrane
GO:0005338molecular_functionnucleotide-sugar transporter activity
GO:0005458molecular_functionGDP-mannose transporter activity
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33584.1.S1_at--1027--3651Chr08:355191..355215 (25 bp)
CTTCAGTTCTTTTTCCTCGAAATCA
LOC_Os08g01610
Os.33584.1.S1_at--168--6931Chr08:355166..355190 (25 bp)
GTATGGACCCCCTGTTGTCGCTCTC
LOC_Os08g01610
Os.33584.1.S1_at--1133--5591Chr08:355026..355050 (25 bp)
GAAATTGCAGCGGTTGGATCGAAAT
LOC_Os08g01610
Os.33584.1.S1_at--452--3731NONE
CTACACCCGTGTAGGGCTGAGGGTA
NONE
Os.33584.1.S1_at--780--4191NONE
CCCGTGTAGGGCTGAGGGTATATCA
NONE
Os.33584.1.S1_at--523--7671NONE
GGGTATATCAGTTTTTGGGTCCTGT
NONE
Os.33584.1.S1_at--97--411NONE
ATCAGTTTTTGGGTCCTGTTAGAAG
NONE
Os.33584.1.S1_at--691--8771NONE
TGTTAGAAGGAAAATGCCCCAGCTC
NONE
Os.33584.1.S1_at--92--10451NONE
TTAGAAGGAAAATGCCCCAGCTCCT
NONE
Os.33584.1.S1_at--443--2531NONE
AACTCAACTCATGGGATACCGTGAT
NONE
Os.33584.1.S1_at--1008--3731NONE
CTCAACTCATGGGATACCGTGATAC
NONE
Target Sequence 
CTTCAGTTCTTTTTCCTCGAAATCANGTATGGACCCCCTGTTGTCGCTCTCGTGGTTGTGGTATACGTCCTCACTTTCAC
TTACGATCGAAANGCCGATAATACTCAAATGCAGGCAGTTTGGGGGAAAAAAAACNATTGACGGGTCGCCGCANTTTGTA
ATGTTGTGAAATTGCAGCGGTTGGATCGAAATGGGATTGGTGTTTTTGTGCGTTGCACGGCTGCTTGGCCTGCTGCTGTG
TTGAGTATACTGTATATACTTGTGCNGTTTAATTTTGTGTTGCCCTTCCCTATATGTTCTTCTACACCCGTGTAGGGCTG
AGGGTATATCAGTTTTTGGGTCCTGTTAGAAGGAAAATGCCCCAGCTCCTCATGTGCAGAACTCAACTCATGGGATACCG
TGATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis