Browse Element(s) Details


Os.33758.1.S1_s_at

Description gb:AK064011.1
DB_XREF= gi:32974029
TID=Os.33758.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33758 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative chloroplast outer envelope hexokinase 1 (P0710E05.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-G12, full insert sequence.
FL= gb:AK064011.1 gb:AK099119.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0946011/11Hexokinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09420Os.9850.1.S1_s_at11/111+4792957..4795256expressed protein
LOC_Os01g09420Os.22772.1.S1_at5/111+4792957..4795256expressed protein
LOC_Os01g09430Os.1465.1.S1_at9/111+4797049..4798979SyrP, putative, expressed
LOC_Os01g09440OsAffx.24130.1.S1_x_at6/111+4804787..4805302hypothetical protein
LOC_Os01g09450Os.19952.1.S1_at11/111+4813647..4815762AUX/IAA family protein, expressed
LOC_Os01g09450OsAffx.26801.1.S1_x_at1/111+4813647..4815762AUX/IAA family protein, expressed
LOC_Os01g09460Os.33758.2.S1_s_at11/111+4816957..4819931Hexokinase 1, putative, expressed
LOC_Os01g09460Os.33758.2.S1_x_at11/111+4816957..4819931Hexokinase 1, putative, expressed
LOC_Os01g09460Os.33758.1.S1_s_at11/111+4816957..4819931Hexokinase 1, putative, expressed
LOC_Os01g09470Os.42877.1.S1_at11/111+4823392..4825535IQ calmodulin-binding motif family protein, expressed
LOC_Os01g09470OsAffx.26803.1.S1_x_at2/111+4823392..4825535IQ calmodulin-binding motif family protein, expressed
LOC_Os01g09480OsAffx.23170.1.S1_at11/111+4833806..4835017hypothetical protein
LOC_Os01g09490Os.35344.3.S1_x_at11/111+4837156..4842141transposon protein, putative, Mutator sub-class
LOC_Os01g09490Os.35344.18.S1_x_at9/111+4837156..4842141transposon protein, putative, Mutator sub-class
LOC_Os01g09490OsAffx.22940.5.S1_x_at3/111+4837156..4842141transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009747biological_processhexokinase-dependent signaling
GO:0010182biological_processsugar mediated signaling
GO:0005739cellular_componentmitochondrion
GO:0004396molecular_functionhexokinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33758.1.S1_s_at--726--2711Chr01:4817355..4817379 (25 bp)
AAGCTTGGAAGAAATGGCGGCATCA
LOC_Os01g09460
Os.33758.1.S1_s_at--52--8291Chr01:4817337..4817361 (25 bp)
GGCATCAACAATCAGCGCTCGGTCA
LOC_Os01g09460
Os.33758.1.S1_s_at--451--4571Chr01:4817323..4817347 (25 bp)
GCGCTCGGTCATCGCCATTGATGGA
LOC_Os01g09460
Os.33758.1.S1_s_at--592--6491Chr01:4817293..4817317 (25 bp)
GTTCGAACACTACACCAAATTCAGG
LOC_Os01g09460
Os.33758.1.S1_s_at--187--9711Chr01:4817207..4817231 (25 bp)
TCAAGCACGCGAACGACGGGTCAGG
LOC_Os01g09460
Os.33758.1.S1_s_at--1047--9031Chr01:4817164..4817188 (25 bp)
TGCAGCCTCTCAATCTCGATGAAAA
LOC_Os01g09460
Os.33758.1.S1_s_at--228--6951Chr01:4817124..4817148 (25 bp)
GTAGTATATGCCGTCCATTTTTGCT
LOC_Os01g09460
Os.33758.1.S1_s_at--1039--7251Chr01:4817112..4817136 (25 bp)
GTCCATTTTTGCTCTGGAGTGAAAA
LOC_Os01g09460
Os.33758.1.S1_s_at--948--2631Chr01:4817074..4817098 (25 bp)
AACCTAGCTTTGTTGTATGTGCTGC
LOC_Os01g09460
Os.33758.1.S1_s_at--788--6191Chr01:4817010..4817034 (25 bp)
GAGGCTTGATATACTGTCGCCCTGC
LOC_Os01g09460
Os.33758.1.S1_s_at--802--7231Chr01:4816995..4817019 (25 bp)
GTCGCCCTGCATAGTTGTAACCTGA
LOC_Os01g09460
Target Sequence 
AAGCTTGGAAGAAATGGCGGCATCAACAATCAGCGCTCGGTCATCGCCATTGATGGAGGTTTGTTCGAACACTACACCAA
ATTCAGGGAATGTTTGGAGAGCACGTTGGGTGAGTTGCTGGGAGAGGAGGCTTCCAAGTCGGTAGCCGTCAAGCACGCGA
ACGACGGGTCAGGGATAGGGGCTGCCCTTATTGCAGCCTCTCAATCTCGATGAAAATTTGCTAGATAAATAGTAGTATAT
GCCGTCCATTTTTGCTCTGGAGTGAAAAAAATTATTGAAAAAACCTAGCTTTGTTGTATGTGCTGCTTGGGCATGGTGGA
ACTGGAAGCAGTCTGTAACCAAAATGAGGCTTGATATACTGTCGCCCTGCATAGTTGTAACCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33758.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis