Browse Element(s) Details


Os.33898.2.S1_x_at

Description gb:NM_185592.1
DB_XREF= gi:34898269
GEN=P0702F05.15
TID=Os.33898.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0702F05.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0702F05.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0638011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06350Os.51669.1.S1_at7/116+2951884..2956630AMP-binding enzyme family protein, expressed
LOC_Os06g06360OsAffx.22585.1.S1_at11/116+2958755..2962007WRKY DNA binding domain containing protein, expressed
LOC_Os06g06370Os.5158.1.S1_at10/116+2965770..2972191expressed protein
LOC_Os06g06380Os.33898.2.S1_x_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06380Os.33898.1.S1_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06390OsAffx.22584.1.S1_at11/116+2979427..2983290NB-ARC domain containing protein, expressed
LOC_Os06g06400Os.33082.1.S1_at11/116+2984134..2989868NB-ARC domain containing protein, expressed
LOC_Os06g06410Os.33206.1.S1_at10/116+2991047..2994595expressed protein
LOC_Os06g06420Os.32701.1.S1_at11/116+2994768..2996966lactoylglutathione lyase family protein, putative, expressed
LOC_Os06g06420OsAffx.21028.1.S1_at9/116+2994768..2996966lactoylglutathione lyase family protein, putative, expressed
LOC_Os06g06430Os.34705.1.S1_at11/116+2998149..2999425expressed protein
LOC_Os06g06440Os.27427.1.S1_at11/116+3000111..3008251multidrug-resistance associated protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33898.2.S1_x_at--62--6571Chr06:2978339..2978363 (25 bp)
GATTCCGGCCGGATGCGCATGCGCA
LOC_Os06g06380
Os.33898.2.S1_x_at--258--611Chr06:2978321..2978345 (25 bp)
ATGCGCATGCGCAGAAGATTCAAGG
LOC_Os06g06380
Os.33898.2.S1_x_at--338--611Chr06:2978315..2978339 (25 bp)
ATGCGCAGAAGATTCAAGGGAGCCG
LOC_Os06g06380
Os.33898.2.S1_x_at--534--3931Chr06:2978165..2978189 (25 bp)
CGGCGAGCAGCTGGCCCTGAATGTT
LOC_Os06g06380
Os.33898.2.S1_x_at--534--1511Chr06:2978160..2978184 (25 bp)
AGCAGCTGGCCCTGAATGTTTCGCA
LOC_Os06g06380
Os.33898.2.S1_x_at--986--1611Chr06:2978157..2978181 (25 bp)
AGCTGGCCCTGAATGTTTCGCAAGG
LOC_Os06g06380
Os.33898.2.S1_x_at--67--3791Chr06:2978149..2978173 (25 bp)
CTGAATGTTTCGCAAGGGAGAGATC
LOC_Os06g06380
Os.33898.2.S1_x_at--232--6851Chr06:2978143..2978167 (25 bp)
GTTTCGCAAGGGAGAGATCAGAGAT
LOC_Os06g06380
Os.33898.2.S1_x_at--901--1271Chr06:2978129..2978153 (25 bp)
AGATCAGAGATGTCGCAGGTGTAAC
LOC_Os06g06380
Os.33898.2.S1_x_at--208--6031Chr06:2978123..2978147 (25 bp)
GAGATGTCGCAGGTGTAACAACCAA
LOC_Os06g06380
Os.33898.2.S1_x_at--920--9051Chr06:2978117..2978141 (25 bp)
TCGCAGGTGTAACAACCAAGCTCTC
LOC_Os06g06380
Target Sequence 
GATTCCGGCCGGATGCGCATGCGCATGCGCAGAAGATTCAAGGGAGCCGGCGGCGGCGAGCAGCTGGCCCTGAATGTTTC
GCAAGGGAGAGATCAGAGATGTCGCAGGTGTAACAACCAAGCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33898.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis