Browse Element(s) Details


Os.3405.1.S1_at

Description gb:AB004660.1
DB_XREF= gi:3273242
TID=Os.3405.1
CNT=75
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.3405 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for NLS receptor, complete cds.
PROD=NLS receptor
FL= gb:AB004660.1 gb:AK068233.1 gb:AK099336.1 gb:AF005265.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1495011/11Importin alpha-1b subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14920Os.32339.1.S1_at11/111+8355819..8359072zinc knuckle family protein, putative, expressed
LOC_Os01g14926OsAffx.23251.1.S1_x_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14926Os.34371.1.S1_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14932Os.64.2.S1_x_at11/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932Os.64.1.S1_at10/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932OsAffx.30458.1.S1_x_at1/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14940OsAffx.23252.1.S1_at11/111+8376855..8377388pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g14950Os.3405.1.S1_at11/111+8378917..8384036Importin alpha-1b subunit, putative, expressed
LOC_Os01g14960Os.30390.1.S1_at11/111+8384391..8385661expressed protein
LOC_Os01g14970OsAffx.11058.1.S1_x_at11/111+8391321..8392277hypothetical protein
LOC_Os01g14980Os.3924.1.S1_at10/111+8393302..8395386pollen-specific protein, putative, expressed
LOC_Os01g14990OsAffx.22225.2.S1_at11/111+8398350..8399127hypothetical protein
LOC_Os01g14990OsAffx.22225.2.S1_s_at11/111+8398350..8399127hypothetical protein
LOC_Os01g15000Os.3927.1.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.3.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.2.S1_s_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006952biological_processdefense response
GO:0005634cellular_componentnucleus
GO:0005635cellular_componentnuclear envelope
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3405.1.S1_at--455--5351Chr01:8383390..8383414 (25 bp)
GAAGATTCTTGAGGCCTACTGGATG
LOC_Os01g14950
Os.3405.1.S1_at--486--8691Chr01:8383453..8383477 (25 bp)
TGCTCCCCAAGGTGCTACTTTTGAC
LOC_Os01g14950
Os.3405.1.S1_at--407--9891Chr01:8383468..8383492 (25 bp)
TACTTTTGACTTTGGCCAAGGCGGT
LOC_Os01g14950
Os.3405.1.S1_at--1006--8411Chr01:8383727..8383751 (25 bp)
GGCCAGTGTTACATTATTTCCCTAC
LOC_Os01g14950
Os.3405.1.S1_at--35--191Chr01:8383742..8383766 (25 bp)
ATTTCCCTACTGGTCACGGATATCA
LOC_Os01g14950
Os.3405.1.S1_at--65--7951Chr01:8383759..8383783 (25 bp)
GGATATCATATCACTACGTCTGTAA
LOC_Os01g14950
Os.3405.1.S1_at--1095--8991Chr01:8383799..8383823 (25 bp)
TGAAGTCTGCGTTTTTCATCAGGCT
LOC_Os01g14950
Os.3405.1.S1_at--456--1151Chr01:8383887..8383911 (25 bp)
AGTCGAAGCTTCTGCAAAGCCGTCA
LOC_Os01g14950
Os.3405.1.S1_at--46--2371Chr01:8383902..8383926 (25 bp)
AAAGCCGTCACAACACATTCCTGAA
LOC_Os01g14950
Os.3405.1.S1_at--9--4291Chr01:8383920..8383944 (25 bp)
TCCTGAACCCGTCTGGTTTTGAGTT
LOC_Os01g14950
Os.3405.1.S1_at--87--4751Chr01:8383958..8383982 (25 bp)
GCTGAGTTGCAGTTTGTCCGGACAT
LOC_Os01g14950
Target Sequence 
GAAGATTCTTGAGGCCTACTGGATGGATGAGGAGGATGATACAATGGGAGCTACCACGGTAGCTGCTCCCCAAGGTGCTA
CTTTTGACTTTGGCCAAGGCGGTGGTGCTGCTCAATTCAAATAAATACAGATTTGACCAGAGGTGGTAAATTGTGGCCAC
TGTGCGGGGTACTGAATTGTTCTGGTGGTTCAATAAGCTAAAGGTTTCAAGGGGGCCAGTGTTACATTATTTCCCTACTG
GTCACGGATATCATATCACTACGTCTGTAACAGGGATTAAAGCTTTGAAGTCTGCGTTTTTCATCAGGCTACTACTATGT
AGTGTTTGCATCTTTTAGTATGGTGTGCAACATTTTGCTACTTGTATAGCCTGAGTCGAAGCTTCTGCAAAGCCGTCACA
ACACATTCCTGAACCCGTCTGGTTTTGAGTTTCGTCAGGAGTGTGCTGAGTTGCAGTTTGTCCGGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis