Browse Element(s) Details


Os.34081.1.S1_at

Description gb:AK072904.1
DB_XREF= gi:32982927
TID=Os.34081.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34081 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0458G06.18 (P0458G06.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023148I23, full insert sequence.
FL= gb:AK072904.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1527011/11expressed protein
LOC_Os02g436001/11ribosomal protein L19 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15230Os.36470.1.S1_at2/117+8781823..8783501hypothetical protein
LOC_Os07g15240OsAffx.16279.1.S1_at11/117+8785598..8786055hypothetical protein
LOC_Os07g15250Os.54691.1.S1_x_at2/117+8788551..8792984Zinc knuckle family protein
LOC_Os07g15260OsAffx.19542.3.S1_x_at2/117+8795620..8799468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g15270Os.34081.1.S1_at11/117+8805577..8809749expressed protein
LOC_Os07g15280OsAffx.10168.1.S1_at11/117+8810541..8813552hypothetical protein
LOC_Os07g15290Os.26886.1.S1_x_at6/117+8817448..8820612transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15290Os.26886.3.S1_x_at2/117+8817448..8820612transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15300Os.26886.1.S1_x_at2/117+8822926..8824767hypothetical protein
LOC_Os07g15300OsAffx.26148.1.S1_x_at1/117+8822926..8824767hypothetical protein
LOC_Os07g15310OsAffx.16467.1.S1_at9/117+8825043..8825682hypothetical protein
LOC_Os07g15310Os.26886.6.S1_s_at7/117+8825043..8825682hypothetical protein
LOC_Os07g15310Os.26886.2.S1_s_at6/117+8825043..8825682hypothetical protein
LOC_Os07g15320Os.36470.1.S1_at11/117+8827244..8829268expressed protein
LOC_Os07g15330OsAffx.16280.1.S1_at8/117+8829639..8832338hypothetical protein
LOC_Os07g15330OsAffx.8723.1.S1_at2/117+8829639..8832338hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34081.1.S1_at--1146--7591Chr07:8808973..8808997 (25 bp)
GGGCAACTCGTGCTACAGCTGAGAT
LOC_Os07g15270
Os.34081.1.S1_at--200--10171Chr07:8809032..8809056 (25 bp)
TTAGAGTTTCGCTGGGTGGGCCCTT
LOC_Os07g15270
Os.34081.1.S1_at--105--7491Chr07:8809047..8809071 (25 bp)
GTGGGCCCTTCAGATGCTGATTATC
LOC_Os07g15270
Os.34081.1.S1_at--255--1372Chr07:8809351..8809375 (25 bp)
AGAGCATTTCCTTGCAAAACATCAG
LOC_Os07g15270
Os.34081.1.S1_at--367--10111Chr07:8809414..8809438 (25 bp)
TATGGACTCCATCATGTTGACCGGC
LOC_Os07g15270
Os.34081.1.S1_at--228--731Chr07:8809427..8809451 (25 bp)
ATGTTGACCGGCAAGTTTACCCACT
LOC_Os07g15270
Os.34081.1.S1_at--943--6811Chr07:8809441..8809465 (25 bp)
GTTTACCCACTTGCAACACATTTAT
LOC_Os07g15270
Os.34081.1.S1_at--620--2951Chr07:8809497..8809521 (25 bp)
AATGGCTCGTGTAATTAGCCCCGTT
LOC_Os07g15270
Os.34081.1.S1_at--1012--2171Chr07:8809526..8809550 (25 bp)
ACACAGCACGGGTACCTTATTGGAT
LOC_Os07g15270
Os.34081.1.S1_at--993--8931Chr07:8809570..8809594 (25 bp)
TGACGTCAAGGGTTTCGCAGAATTT
LOC_Os07g15270
Os.34081.1.S1_at--212--5551Chr07:8809595..8809619 (25 bp)
GAAACGCTTCTGAAATTTGGACTTC
LOC_Os07g15270
Target Sequence 
GGGCAACTCGTGCTACAGCTGAGATGTTTAATGATCGCCCCCGGAGACCTGGGAACAAGTTAGAGTTTCGCTGGGTGGGC
CCTTCAGATGCTGATTATCATATTGTCAAAAAGTTGAAGTTAATGTCGAGGAGACATGAGCTGGATAACTTGGCATTAGT
CAAGCATGAGCTGGAAGAAGAGCATTTCCTTGCAAAACATCAGGAGGAGATTTTGAATTGCAATCAGAGGAAGCTTGAAG
TTATGGACTCCATCATGTTGACCGGCAAGTTTACCCACTTGCAACACATTTATAGCGTCAAGGTGGATGAAGTGTTTTGT
AACAAATGGCTCGTGTAATTAGCCCCGTTCTCCACACAGCACGGGTACCTTATTGGATTGGTTCAATGTTTGTGAACTGA
CGTCAAGGGTTTCGCAGAATTTGAAACGCTTCTGAAATTTGGACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis