Browse Element(s) Details


Os.3426.1.S1_at

Description gb:AK069348.1
DB_XREF= gi:32979372
TID=Os.3426.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3426 (NCBI UniGene Cluster)
UG_TITLE=MRNA RAPB protein
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014B08, full insert sequence.
FL= gb:AK069348.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0788011/11CCAAT-binding transcription factor subunit B family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07810Os.51089.1.S1_at11/113+3954068..3956526expressed protein
LOC_Os03g07820Os.52560.1.S1_at11/113+3957779..3962643exostosin family protein, putative, expressed
LOC_Os03g07830OsAffx.12772.1.S1_at11/113+3964011..3964967AP2 domain containing protein
LOC_Os03g07840Os.8295.1.S1_at11/113+3965867..3969105Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
LOC_Os03g07850Os.11726.2.S1_x_at11/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07850Os.53180.1.S1_at4/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07850Os.41415.1.S1_at1/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07870OsAffx.12773.1.S1_at11/113+3978590..3980770hypothetical protein
LOC_Os03g07880Os.3426.1.S1_at11/113+3981120..3984531CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g07880Os.3426.2.S1_x_at8/113+3981120..3984531CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g07890OsAffx.12774.1.S1_s_at11/113+3993626..3995589mitochondrial carrier, putative, expressed
LOC_Os03g07910Os.19194.1.S1_at11/113+4003494..4007622hydrolase, carbon-nitrogen family protein, expressed
LOC_Os03g07910Os.29823.1.S1_at1/113+4003494..4007622hydrolase, carbon-nitrogen family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3426.1.S1_at--869--9611Chr03:3981485..3981509 (25 bp)
TCATCGTCGTGCGAAAGAGGGCGCT
LOC_Os03g07880
Os.3426.1.S1_at--910--5151Chr03:3981346..3981370 (25 bp)
GCAACTGTAACTAGGGTGCTTGACA
LOC_Os03g07880
Os.3426.1.S1_at--602--2531Chr03:3981338..3981362 (25 bp)
AACTAGGGTGCTTGACATCTGTGTC
LOC_Os03g07880
Os.3426.1.S1_at--614--5671Chr03:3981325..3981349 (25 bp)
GACATCTGTGTCTGTTGTTCCTCTG
LOC_Os03g07880
Os.3426.1.S1_at--1122--5591Chr03:3981236..3981260 (25 bp)
GACAAGGACAAAACTAGCACCCCGT
LOC_Os03g07880
Os.3426.1.S1_at--588--1411Chr03:3981221..3981245 (25 bp)
AGCACCCCGTTATGTTTCCTGGCTT
LOC_Os03g07880
Os.3426.1.S1_at--598--4271Chr03:3981204..3981228 (25 bp)
CCTGGCTTCTGAATTTGGTGGTCAT
LOC_Os03g07880
Os.3426.1.S1_at--361--2731Chr03:3981174..3981198 (25 bp)
AAGCAAGCACTCGACGTCAGCGGGA
LOC_Os03g07880
Os.3426.1.S1_at--653--7671Chr03:3981147..3981171 (25 bp)
GGGTTGCTTCGATTGATCTAGTTCT
LOC_Os03g07880
Os.3426.1.S1_at--50--4051Chr03:3981138..3981162 (25 bp)
CGATTGATCTAGTTCTTTCGCGATA
LOC_Os03g07880
Os.3426.1.S1_at--200--6431Chr03:3981133..3981157 (25 bp)
GATCTAGTTCTTTCGCGATAAACTT
LOC_Os03g07880
Target Sequence 
TCATCGTCGTGCGAAAGAGGGCGCTTGAGATCCTCGCCGTTTCTGTCATGGCAAATCATCCTTGGCTTATGTGTGGTGCC
CAGCAAAAAAAAANTCTGACTGAACCTGTGTGTAAACTGATGGGTATGGGTGGGTTTTGTGCAACTGTAACTAGGGTGCT
TGACATCTGTGTCTGTTGTTCCTCTGCCTCCTTAGTTTGGAGACGGTGCAGCTGCAGCTGGTACCAGTAATCTGATCATG
CTAGACTTGTGACAAGGACAAAACTAGCACCCCGTTATGTTTCCTGGCTTCTGAATTTGGTGGTCATTCAGNAAGCAAGC
ACTCGACGTCAGCGGGAGGGGGTTGCTTCGATTGATCTAGTTCTTTCGCGATAAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis