Browse Element(s) Details


Os.34459.1.S1_at

Description gb:AK071316.1
DB_XREF= gi:32981339
TID=Os.34459.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.34459 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative heat shock protein (OSJNBa0006I13.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083J21, full insert sequence.
FL= gb:AK071316.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2836011/111,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28320Os.38371.1.S1_a_at10/1110+14402113..14407215Auxin-induced protein PCNT115, putative, expressed
LOC_Os10g28330OsAffx.30568.1.S1_at11/1110+14410500..14413348Zinc finger, C2H2 type family protein
LOC_Os10g28340Os.10942.1.S1_a_at11/1110+14416706..14420777HSF-type DNA-binding domain containing protein, expressed
LOC_Os10g28350Os.4766.1.S1_at10/1110+14422575..144249281,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os10g28360Os.34459.1.S1_at11/1110+14427730..144303661,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os10g28370OsAffx.30569.1.S1_x_at11/1110+14434249..14435588Chlorophyllase family protein, expressed
LOC_Os10g28380OsAffx.30570.1.S1_at11/1110+14438455..14439908hypothetical protein
LOC_Os10g28380OsAffx.20341.1.S1_x_at1/1110+14438455..14439908hypothetical protein
LOC_Os10g28390OsAffx.8121.1.S1_at11/1110+14443524..14443784hypothetical protein
LOC_Os10g28400OsAffx.20341.1.S1_x_at10/1110+14444352..14446444expressed protein
LOC_Os10g28400OsAffx.20341.1.S1_at9/1110+14444352..14446444expressed protein
LOC_Os10g28410Os.37540.1.S1_x_at11/1110+14447026..14449651expressed protein
LOC_Os10g28410Os.37540.2.S1_at10/1110+14447026..14449651expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34459.1.S1_at--583--3951Chr10:14428812..14428836 (25 bp)
CGGTTACTTTGATGTCCGTGACAAG
LOC_Os10g28360
Os.34459.1.S1_at--351--5991Chr10:14428753..14428777 (25 bp)
GAGACATGATCATCCTGCCAGCTGG
LOC_Os10g28360
Os.34459.1.S1_at--1016--3371Chr10:14428735..14428759 (25 bp)
CAGCTGGGATTTATCATCGGTTCAT
LOC_Os10g28360
Os.34459.1.S1_at--973--491Chr10:14428720..14428744 (25 bp)
ATCGGTTCATCGTCGACAGCAACAA
LOC_Os10g28360
Os.34459.1.S1_at--1122--8871Chr10:14428124..14428148 (25 bp)
TGAGGCTCTTCATTGGAGAACCAGT
LOC_Os10g28360
Os.34459.1.S1_at--1090--9571Chr10:14428015..14428039 (25 bp)
TCTTGCCGCACATTGAGTTTGCTGA
LOC_Os10g28360
Os.34459.1.S1_at--881--7571Chr10:14427985..14428009 (25 bp)
GGGCTCACTATACAACTGTCCTATA
LOC_Os10g28360
Os.34459.1.S1_at--155--7271Chr10:14427968..14427992 (25 bp)
GTCCTATACATCACACTACTCATGA
LOC_Os10g28360
Os.34459.1.S1_at--360--5451Chr10:14427937..14427961 (25 bp)
GAACCCATGCTGTTTTTATCATGAA
LOC_Os10g28360
Os.34459.1.S1_at--454--6931Chr10:14427871..14427895 (25 bp)
GTAGTACTACTATCCGGCTATCCTA
LOC_Os10g28360
Os.34459.1.S1_at--343--8951Chr10:14427805..14427829 (25 bp)
TGACTGGTCCTGTACTCTTGTGCAA
LOC_Os10g28360
Target Sequence 
CGGTTACTTTGATGTCCGTGACAAGGATGACAAATGGATTCGGATTTGGATAAAAGAGGGAGACATGATCATCCTGCCAG
CTGGGATTTATCATCGGTTCATCGTCGACAGCAACAACTATATCAAGCTCATGAGGCTCTTCATTGGAGAACCAGTCTGG
ACCGCATACAACCGGCCACAGGAAGACCATCCTGTGAGGCAAGAGTATGTCAAGAATGTGAAGGGGGACACCGGATTTGC
TCTTGCCGCACATTGAGTTTGCTGAATTGGGGGCTCACTATACAACTGTCCTATACATCACACTACTCATGAAATCATGA
ACCCATGCTGTTTTTATCATGAATCATGAAAACACATATGCAGTACACTTGAAAACTATCATATGTAGTACTACTATCCG
GCTATCCTACAAAAATTTTAGTACTACTTGAAACATTGCAGTATACACAGTGACTGGTCCTGTACTCTTGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis