Browse Element(s) Details


Os.34647.1.S1_at

Description gb:AK070644.1
DB_XREF= gi:32980668
TID=Os.34647.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.34647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023062F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062F11, full insert sequence.
FL= gb:AK070644.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5012011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50070OsAffx.25437.1.S1_at3/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50070OsAffx.5014.1.S1_at1/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50070OsAffx.22766.1.S1_at1/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50080Os.54644.1.S1_at9/115+28618961..28621222Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g50090OsAffx.15175.2.A1_at10/115+28622415..28625251oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g50100Os.55247.1.S1_at10/115+28627048..28627954expressed protein
LOC_Os05g50110Os.55591.1.S1_at11/115+28633222..28634507Oleosin family protein, expressed
LOC_Os05g50110Os.51746.1.S1_s_at11/115+28633222..28634507Oleosin family protein, expressed
LOC_Os05g50120Os.34647.1.S1_at11/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50120Os.34984.3.S1_x_at1/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50130OsAffx.15176.1.S1_at10/115+28648050..28650974Homeobox associated leucine zipper family protein
LOC_Os05g50140OsAffx.27390.1.S1_at11/115+28652106..28654544Auxin efflux carrier component 3, putative
LOC_Os05g50150NANA5+28656100..28656375hypothetical protein
LOC_Os05g50160OsAffx.27391.1.S1_at11/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50160OsAffx.27391.1.S1_x_at11/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50160OsAffx.23670.1.S1_x_at2/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50170Os.52893.1.S1_at11/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50170OsAffx.9402.1.S1_x_at1/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50170OsAffx.9402.1.S1_at1/115+28662017..28668390Carboxylesterase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0004707molecular_functionMAP kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34647.1.S1_at--645--5411Chr05:28642532..28642556 (25 bp)
GAAGCCATGCCATGCATCAGTGACA
LOC_Os05g50120
Os.34647.1.S1_at--521--1491Chr05:28642566..28642590 (25 bp)
AGCAAACCGCTCATGAGTGCTCGGA
LOC_Os05g50120
Os.34647.1.S1_at--1134--1531Chr05:28642608..28642632 (25 bp)
AGCATAAGCGCTTCCAAGTGTATTG
LOC_Os05g50120
Os.34647.1.S1_at--102--6451Chr05:28642807..28642828 (22 bp)
GATCAGGAGGATTCCCTTACAGAGA
LOC_Os05g50120
Os.34647.1.S1_at--464--6291Chr05:28642883..28642907 (25 bp)
GATGATTCCCGTCAAGGTCACAGAA
LOC_Os05g50120
Os.34647.1.S1_at--319--791Chr05:28642931..28642955 (25 bp)
ATGTGTATAGATGCCCTTCCCCAGA
LOC_Os05g50120
Os.34647.1.S1_at--679--6431Chr05:28642970..28642994 (25 bp)
GATCAGGACGGTCTTAACCATGATA
LOC_Os05g50120
Os.34647.1.S1_at--37--6791Chr05:28643025..28643049 (25 bp)
GTTTTGGTAACCTCTGTTGTACTGT
LOC_Os05g50120
Os.34647.1.S1_at--38--4211Chr05:28643059..28643083 (25 bp)
CCCCTTCAGTTTTGTGTTTTGACAG
LOC_Os05g50120
Os.34647.1.S1_at--227--3971Chr05:28643116..28643140 (25 bp)
CGTCTTTTCCTCGATGGGACAATCA
LOC_Os05g50120
Os.34647.1.S1_at--211--7631Chr05:28643131..28643155 (25 bp)
GGGACAATCACCGATCCTGTAAAAT
LOC_Os05g50120
Target Sequence 
GAAGCCATGCCATGCATCAGTGACAGACGNCATTAGCAAACCGCTCATGAGTGCTCGGAGCTTGTTGAAGAGTGAAAGCA
TAAGCGCTTCCAAGTGTATTGGTGAAAAACCAAAGCAAGACAGAGATCAGGAGGATTCCCTTACAGAGANCATGGACGAA
ACAGCTGATGAGGTCTCNGAAAAGGTTGCTCAACTGAAAANCTGATGATTCCCGTCAAGGTCACAGAATCGATCGGAGTT
AGTACAACAGCATGTGTATAGATGCCCTTCCCCAGAAGACGAGAATCCCAGATCAGGACGGTCTTAACCATGATAAAGAG
TCTACAACTAATAATACCACAAGTTGTTTTGGTAACCTCTGTTGTACTGTAAATTTTTCCCCCTTCAGTTTTGTGTTTTG
ACAGCAAACAACTGTCTAACTGACTGGTTAGTTCCNCGTCTTTTCCTCGATGGGACAATCACCGATCCTGTAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis