Browse Element(s) Details


Os.34868.1.S1_at

Description gb:AK069806.1
DB_XREF= gi:32979830
TID=Os.34868.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34868 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm (OJ1112_E08.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030P11, full insert sequence.
FL= gb:AK069806.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3768011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37640Os.44676.1.S1_at11/117+22564063..22569813IKI3 family protein, putative, expressed
LOC_Os07g37650Os.11759.1.S1_at11/117+22570439..22576212GTPase activating protein, putative, expressed
LOC_Os07g37660OsAffx.22485.1.S1_x_at11/117+22578377..22578792hypothetical protein
LOC_Os07g37670NANA7+22581259..22586123retrotransposon protein, putative, unclassified
LOC_Os07g37680Os.34868.1.S1_at11/117+22589212..22592946expressed protein
LOC_Os07g37680Os.14275.1.S1_at8/117+22589212..22592946expressed protein
LOC_Os07g37680OsAffx.14754.1.S1_at2/117+22589212..22592946expressed protein
LOC_Os07g37690Os.5606.1.S1_at11/117+22595962..22597649UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g37700Os.34120.1.S1_at3/117+22600371..22600601hypothetical protein
LOC_Os07g37710Os.48016.1.S1_at6/117+22606199..22606950hypothetical protein
LOC_Os07g37720Os.48016.1.S1_at7/117+22608407..22614233hypothetical protein
LOC_Os07g37730Os.44475.1.S1_at11/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37730Os.44475.1.S1_x_at11/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37730OsAffx.22555.1.S1_x_at3/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34868.1.S1_at--798--7471Chr07:22592617..22592641 (25 bp)
GTGTGTCTTCGCCAGAGCCAGAAGA
LOC_Os07g37680
Os.34868.1.S1_at--19--8631Chr07:22592642..22592666 (25 bp)
TGGTGTTTCTAGACCATCCTAGCCA
LOC_Os07g37680
Os.34868.1.S1_at--670--3711Chr07:22592660..22592684 (25 bp)
CTAGCCATGCTGATATTGGTTGATT
LOC_Os07g37680
Os.34868.1.S1_at--546--31Chr07:22592674..22592698 (25 bp)
ATTGGTTGATTTCTTCTCGAGTGCA
LOC_Os07g37680
Os.34868.1.S1_at--344--9511Chr07:22592688..22592712 (25 bp)
TCTCGAGTGCAGTTCATTCTGTCAA
LOC_Os07g37680
Os.34868.1.S1_at--1082--6731Chr07:22592699..22592723 (25 bp)
GTTCATTCTGTCAAAATCTACTGTA
LOC_Os07g37680
Os.34868.1.S1_at--400--3051Chr07:22592713..22592737 (25 bp)
AATCTACTGTAGACGCTGGTGAAGC
LOC_Os07g37680
Os.34868.1.S1_at--738--5791Chr07:22592724..22592748 (25 bp)
GACGCTGGTGAAGCAACTGAATGGC
LOC_Os07g37680
Os.34868.1.S1_at--384--2971Chr07:22592743..22592767 (25 bp)
AATGGCAATGATTTAGACGAGGAAC
LOC_Os07g37680
Os.34868.1.S1_at--1122--5751Chr07:22592758..22592782 (25 bp)
GACGAGGAACACACTTTTGCTGCCA
LOC_Os07g37680
Os.34868.1.S1_at--39--4791Chr07:22592776..22592800 (25 bp)
GCTGCCATGTGCTGAGTGCTGTAGA
LOC_Os07g37680
Target Sequence 
GTGTGTCTTCGCCAGAGCCAGAAGATGGTGTTTCTAGACCATCCTAGCCATGCTGATATTGGTTGATTTCTTCTCGAGTG
CAGTTCATTCTGTCAAAATCTACTGTAGACGCTGGTGAAGCAACTGAATGGCAATGATTTAGACGAGGAACACACTTTTG
CTGCCATGTGCTGAGTGCTGTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis