Browse Element(s) Details


Os.34979.1.S1_at

Description gb:AK066148.1
DB_XREF= gi:32976166
TID=Os.34979.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023023P13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056D23, full insert sequence.
FL= gb:AK066148.1 gb:AK069436.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3206010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32010NANA5+18573019..18573456hypothetical protein
LOC_Os05g32020NANA5+18574453..18574707hypothetical protein
LOC_Os05g32030OsAffx.17848.5.S1_at11/115+18580296..18584516hypothetical protein
LOC_Os05g32030OsAffx.17848.5.S1_x_at10/115+18580296..18584516hypothetical protein
LOC_Os05g32030OsAffx.17848.1.S1_x_at3/115+18580296..18584516hypothetical protein
LOC_Os05g32030OsAffx.17848.4.S1_x_at3/115+18580296..18584516hypothetical protein
LOC_Os05g32030OsAffx.17848.3.S1_x_at3/115+18580296..18584516hypothetical protein
LOC_Os05g32030OsAffx.17848.4.S1_at2/115+18580296..18584516hypothetical protein
LOC_Os05g32030OsAffx.17848.2.S1_x_at2/115+18580296..18584516hypothetical protein
LOC_Os05g32030Os.54363.1.S1_at2/115+18580296..18584516hypothetical protein
LOC_Os05g32040NANA5+18586482..18588665retrotransposon protein, putative, unclassified
LOC_Os05g32050NANA5+18589211..18595049retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g32060Os.22774.1.S1_at11/115+18597636..18602300expressed protein
LOC_Os05g32060Os.34979.1.S1_at10/115+18597636..18602300expressed protein
LOC_Os05g32070NANA5+18610675..18612009lateral root primordium 1, putative, expressed
LOC_Os05g32080Os.47130.4.A1_x_at1/115+18616803..18617129retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34979.1.S1_at--501--10631NONE
TTCCCGAAAGTGTGGCCACCCTTGT
NONE
Os.34979.1.S1_at--352--8211Chr05:18602107..18602131 (25 bp)
GGAATGTTACTCGATAATTGAGGCT
LOC_Os05g32060
Os.34979.1.S1_at--22--9751Chr05:18602121..18602145 (25 bp)
TAATTGAGGCTTGGGATCCTTCGCG
LOC_Os05g32060
Os.34979.1.S1_at--183--3651Chr05:18602139..18602163 (25 bp)
CTTCGCGCTTGTGCCATTACATGAA
LOC_Os05g32060
Os.34979.1.S1_at--494--8691Chr05:18602148..18602172 (25 bp)
TGTGCCATTACATGAAATCTTTCAA
LOC_Os05g32060
Os.34979.1.S1_at--117--8871Chr05:18602212..18602236 (25 bp)
TGAGAGGGAAGCATGGAATTCACAT
LOC_Os05g32060
Os.34979.1.S1_at--855--111Chr05:18602229..18602253 (25 bp)
ATTCACATGACGATCAGGTGTTCCT
LOC_Os05g32060
Os.34979.1.S1_at--409--1052Chr05:18602244..18602268 (25 bp)
AGGTGTTCCTAGTTAAGTTGCATAC
LOC_Os05g32060
Os.34979.1.S1_at--1081--6631Chr05:18602260..18602284 (25 bp)
GTTGCATACTTACAGTCCAAGTCCG
LOC_Os05g32060
Os.34979.1.S1_at--1074--10471Chr05:18602269..18602293 (25 bp)
TTACAGTCCAAGTCCGAAGTCCATT
LOC_Os05g32060
Os.34979.1.S1_at--1082--7251Chr05:18602274..18602298 (25 bp)
GTCCAAGTCCGAAGTCCATTGATGA
LOC_Os05g32060
Target Sequence 
TTCCCGAAAGTGTGGCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGGGACGAAGAAAGGTGA
TTAAATGGTTTTGCCTCGCTGATACTCAATTCAGCTGATAGTGTTTACATTAGAAGCCATCGAAGGATCTCCGTGGTCAA
TAAAACAAGTGAATCAACGCATGTTCTTCTTAGGCGGCAGACACGATTGGCTAATTCCTACAAATTAACCTAGAATTAGT
TTTTGGCAAGTAAAACACGGTAGTTATTTGGTCAAGTGAGGTGGTCCATTTTTGGTGTTGTAAAGCTGAAACGTGAGCTT
TTGGTAATACTCCTAGATCATTCGATTGTATTGTAAAGCAGAAATATTAGTCAAGTTTGTTGCACGGGAATGTTACTCGA
TAATTGAGGCTTGGGATCCTTCGCGCTTGTGCCATTACATGAAATCTTTCAAAAAGTAGTGTTTGTCATGAGAGGATTGA
GAGAGATGGTTTGAGAGGGAAGCATGGAATTCACATGACGATCAGGTGTTCCTAGTTAAGTTGCATACTTACAGTCCAAG
TCCGAAGTCCATTGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis