Browse Element(s) Details


Os.34986.1.S1_at

Description gb:AK069420.1
DB_XREF= gi:32979444
TID=Os.34986.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.34986 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1119_A04.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020C21, full insert sequence.
FL= gb:AK069420.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0259011/11expressed protein
LOC_Os07g026102/11hypothetical protein
LOC_Os07g026741/11expressed protein
LOC_Os07g026401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02540OsAffx.16049.1.S1_at11/117+907899..909184acetyltransferase, GNAT family protein, expressed
LOC_Os07g02540OsAffx.16049.1.S1_x_at11/117+907899..909184acetyltransferase, GNAT family protein, expressed
LOC_Os07g02540OsAffx.3615.1.S1_s_at1/117+907899..909184acetyltransferase, GNAT family protein, expressed
LOC_Os07g02550NANA7+916698..917609hypothetical protein
LOC_Os07g02560OsAffx.21075.2.S1_at11/117+918200..919735NB-ARC domain containing protein
LOC_Os07g02570Os.35752.2.S1_x_at11/117+923605..925137NB-ARC domain containing protein
LOC_Os07g02580Os.35752.3.S1_at11/117+926270..926677NADH ubiquinone oxidoreductase, 20 Kd subunit family protein
LOC_Os07g02580Os.35752.3.S1_x_at11/117+926270..926677NADH ubiquinone oxidoreductase, 20 Kd subunit family protein
LOC_Os07g02590Os.18548.1.S1_x_at11/117+926839..929603expressed protein
LOC_Os07g02590Os.34986.1.S1_at11/117+926839..929603expressed protein
LOC_Os07g02590Os.18548.1.S1_at11/117+926839..929603expressed protein
LOC_Os07g02600Os.46785.2.S1_x_at3/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02600OsAffx.30226.2.S1_x_at1/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02600OsAffx.442.1.S1_x_at1/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02610Os.34986.1.S1_at2/117+937911..940047hypothetical protein
LOC_Os07g02620OsAffx.21073.1.S1_at11/117+943506..945077NB-ARC domain containing protein
LOC_Os07g02630Os.34631.1.S1_at11/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.16053.1.S1_at1/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.28236.2.S1_x_at1/117+949161..952105expressed protein
LOC_Os07g02640OsAffx.28236.2.S1_x_at11/117+954543..955950hypothetical protein
LOC_Os07g02640Os.34986.1.S1_at1/117+954543..955950hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34986.1.S1_at--79--2611Chr07:927310..927334 (25 bp)
AACGCGTATCTTGTTGGTGGTCCTT
LOC_Os07g02590
Os.34986.1.S1_at--526--4671Chr07:927280..927304 (25 bp)
GCGGTTAAACCTGCATATGTTCGGA
LOC_Os07g02590
Os.34986.1.S1_at--157--212Chr07:927244..927268 (25 bp)
ATTTCCTCTGAATATCTTGTGGTTC
LOC_Os07g02590
Os.34986.1.S1_at--297--8671Chr07:927227..927251 (25 bp)
TGTGGTTCTTCACGACTATCAGACA
LOC_Os07g02590
Os.34986.1.S1_at--991--2031Chr07:927213..927237 (25 bp)
ACTATCAGACACTCTCTGTTCCAAA
LOC_Os07g02590
Os.34986.1.S1_at--999--7771Chr07:927185..927209 (25 bp)
GGTCCATTGTTACACAAACTCTGCT
LOC_Os07g02590
Os.34986.1.S1_at--317--5331Chr07:927148..927172 (25 bp)
GAAGTCCCCGAGGTCAGTATGCAAG
LOC_Os07g02590
Os.34986.1.S1_at--1088--10571Chr07:927120..927144 (25 bp)
TTCTCTTCGGAAGTGTTAAGCCTCA
LOC_Os07g02590
Os.34986.1.S1_at--951--10654Chr07:965630..965654 (25 bp)
TTCCACCTCACTACAACTACATTTT
LOC_Os07g02674
Os.34986.1.S1_at--380--7391Chr07:927030..927054 (25 bp)
GTGAGGTACGGAGGCCACATCATAT
LOC_Os07g02590
Os.34986.1.S1_at--294--9471Chr07:926865..926889 (25 bp)
TCTGTGTACATCCAAGCTCCTATGT
LOC_Os07g02590
Target Sequence 
AACGCGTATCTTGTTGGTGGTCCTTGGGAGGCGGTTAAACCTGCATATGTTCGGACGGTAAACAAAATTTCCTCTGAATA
TCTTGTGGTTCTTCACGACTATCAGACACTCTCTGTTCCAAACATGGTCCATTGTTACACAAACTCTGCTCAGAGTGAAG
GTGAAGTCCCCGAGGTCAGTATGCAAGATTTTCTCTTCGGAAGTGTTAAGCCTCAANGAAAATTCAAGGTTCTCGCATGG
AGATCTCACCTTCCACCTCACTACAACTACATTTTCAACTGTGAGGTACGGAGGCCACATCATATGGTCACCAGTAAGAA
GAGATCTCATAAGCTTTGCACCTGACCATCTCAGATAGTAANCCATATTGTTAGGTTGTGGTACCTTTTAGTATCTAAGN
TNCGAGANNNNNNTCTTGTTATTGTCTGAAACTGTTGTATAAATATGAGCATCTGTGTACATCCAAGCTCCTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis