Browse Element(s) Details


Os.35041.1.S1_at

Description gb:AK069185.1
DB_XREF= gi:32979209
TID=Os.35041.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35041 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to formyl transferase (P0519D04.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008N17, full insert sequence.
FL= gb:AK069185.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4933010/11methionyl-tRNA formyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49300NANA1+28665123..28669321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g49310Os.14151.1.S1_at10/111+28672690..28677882expressed protein
LOC_Os01g49310Os.41682.1.S1_x_at10/111+28672690..28677882expressed protein
LOC_Os01g49320Os.17479.1.S1_at11/111+28681672..28682915Acidic endochitinase precursor, putative, expressed
LOC_Os01g49330Os.35041.2.S1_x_at11/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49330Os.35041.1.S1_at10/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49340Os.32007.1.S1_x_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.54637.1.S1_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.32007.1.S1_at10/111+28694783..28697378expressed protein
LOC_Os01g49350Os.33804.2.S1_x_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.33804.1.S1_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.25168.2.A1_at3/111+28697767..28701355expressed protein
LOC_Os01g49350OsAffx.6448.1.S1_at1/111+28697767..28701355expressed protein
LOC_Os01g49360OsAffx.11528.1.S1_at11/111+28703433..28706534FAD-binding domain-containing protein, putative, expressed
LOC_Os01g49370OsAffx.24369.13.S1_s_at11/111+28707937..28710487expressed protein
LOC_Os01g49380Os.50385.1.S1_at11/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.50385.1.S1_s_at11/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.45956.1.S1_x_at9/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.7467.1.S1_at1/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0009152biological_processpurine ribonucleotide biosynthesis
GO:0008864molecular_functionformyltetrahydrofolate deformylase activity
GO:0016742molecular_functionhydroxymethyl-, formyl- and related transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35041.1.S1_at--222--5471Chr01:28694234..28694258 (25 bp)
GAACTCATTGCTGATTCCTTGCGGT
LOC_Os01g49330
Os.35041.1.S1_at--300--91Chr01:28694247..28694271 (25 bp)
ATTCCTTGCGGTGGATCATCTTGTC
LOC_Os01g49330
Os.35041.1.S1_at--471--6431Chr01:28694260..28694366 (25 bp)
GATCATCTTGTCTCGAGGTCGTGGA
LOC_Os01g49330
Os.35041.1.S1_at--818--6431Chr01:28694464..28694488 (25 bp)
GATCATCACAGCGTATACTACCACT
LOC_Os01g49330
Os.35041.1.S1_at--1062--8671Chr01:28694513..28694537 (25 bp)
TGTGATATGCGCTTGATTTCTACAA
LOC_Os01g49330
Os.35041.1.S1_at--15--7851Chr01:28694595..28694619 (25 bp)
GGTAGAGGCACATTACTCGACGAGA
LOC_Os01g49330
Os.35041.1.S1_at--95--2011Chr01:28694609..28694633 (25 bp)
ACTCGACGAGATCTTTTACTTTTCA
LOC_Os01g49330
Os.35041.1.S1_at--791--2231NONE
AAATTCCATGCTGCTTCGTGTTTTT
NONE
Os.35041.1.S1_at--286--7891Chr01:28694670..28694694 (25 bp)
TCGTGTTTTTAGATACCTCGTACCT
LOC_Os01g49330
Os.35041.1.S1_at--1113--4271Chr01:28694692..28694716 (25 bp)
CCTCCATTCGCCATTGGAATCTGTA
LOC_Os01g49330
Os.35041.1.S1_at--160--7311Chr01:28694781..28694805 (25 bp)
GTGCTGACCAGTACAATTCCTGATT
LOC_Os01g49330
Target Sequence 
GAACTCATTGCTGATTCCTTGCGGTGGATCATCTTGTCTCGAGGTCGTGGAGCTTCAACTCCCTGGAAAGAAGGTGACGA
CAGCAAGGGACTTCTGGAATGGTTTGCGTGGTCAGAGGCTGCTGAAATCACCATAGAAGAATTACCATGATCATCACAGC
GTATACTACCACTGCATGAACAACAAAGACGATCGTATGTGATATGCGCTTGATTTCTACAAGTCATGGTAGAAACTGAT
GCTGTCAATGGAGAACATTTTCAGGAGAATGCTACTACAGGTAGAGGCACATTACTCGACGAGATCTTTTACTTTTCAGA
TCGTATCATTGTGAAGATAAAATTCCATGCTGCTTCGTGTTTTTAGATACCTCGTACCTCCATTCGCCATTGGAATCTGT
ATTATCTCCAAAATTTTGGGAAAGAGTGCACAATTGTTAGCTACTATTTGTAAGAGAGACAGAGAGTGCTGACCAGTACA
ATTCCTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35041.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis