Browse Element(s) Details


Os.35044.2.S1_x_at

Description gb:NM_193731.1
DB_XREF= gi:34914545
GEN=OSJNBa0094H06.20
TID=Os.35044.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35044 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative beta-glucosidase (OSJNBa0094H06.20), mRNA.
PROD=putative beta-glucosidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3236411/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32320OsAffx.19542.3.S1_x_at3/111+18057922..18061809retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g32330Os.10122.1.S1_at11/111+18067906..18069143farnesylated protein 2, putative, expressed
LOC_Os01g32350Os.23178.1.S1_at11/111+18073209..18078936ATP-dependent Clp protease proteolytic subunit 1, putative, expressed
LOC_Os01g32364Os.35044.2.S1_x_at11/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364OsAffx.12505.2.S1_at4/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364OsAffx.12505.1.S1_x_at2/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364Os.46370.1.A1_x_at1/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32380Os.5593.1.S1_at7/111+18094741..18095368expressed protein
LOC_Os01g32389Os.5593.1.S1_at2/111+18097436..18098714NA
LOC_Os01g32389OsAffx.6232.1.S1_s_at1/111+18097436..18098714NA
LOC_Os01g32400OsAffx.21171.5.S1_at5/111+18102207..18104199retrotransposon protein, putative, unclassified
LOC_Os01g32400OsAffx.21171.5.S1_x_at3/111+18102207..18104199retrotransposon protein, putative, unclassified
LOC_Os01g32410OsAffx.940.1.S1_x_at1/111+18105474..18107011retrotransposon protein, putative, unclassified
LOC_Os01g32420OsAffx.22711.4.A1_x_at2/111+18109885..18110625retrotransposon protein, putative, unclassified
LOC_Os01g32430OsAffx.2132.2.S1_s_at11/111+18116600..18117148hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35044.2.S1_x_at--418--2831Chr01:18090611..18090635 (25 bp)
AAGTTCACGGCCGATGAGGTCCACA
LOC_Os01g32364
Os.35044.2.S1_x_at--924--7651Chr01:18090643..18090667 (25 bp)
GGGATCAATCGACTATGTTGGCATT
LOC_Os01g32364
Os.35044.2.S1_x_at--605--151Chr01:18090684..18090708 (25 bp)
ATTATGTCCGTGATCAGCAGCCGAA
LOC_Os01g32364
Os.35044.2.S1_x_at--1158--10031Chr01:18090724..18090748 (25 bp)
TAGTTACTCGTCTGACTGGCATGCT
LOC_Os01g32364
Os.35044.2.S1_x_at--172--631Chr01:18090744..18090956 (25 bp)
ATGCTGCACCTATTTATGAACGCGA
LOC_Os01g32364
Os.35044.2.S1_x_at--211--7571Chr01:18091074..18091097 (24 bp)
GGGCGAATTCTGACTGGCTTTACAT
LOC_Os01g32364
Os.35044.2.S1_x_at--643--7031Chr01:18091113..18091137 (25 bp)
GTACAAAGCTGTCACCTATGTCAAG
LOC_Os01g32364
Os.35044.2.S1_x_at--848--7831Chr01:18091147..18091171 (25 bp)
GGTAACCCCACAATGTTTCTATCTG
LOC_Os01g32364
Os.35044.2.S1_x_at--1155--6131Chr01:18091320..18091344 (25 bp)
GAGGGTCGCCTACTACAGGAGCTAC
LOC_Os01g32364
Os.35044.2.S1_x_at--304--3871Chr01:18091401..18091425 (25 bp)
CTGGTCCCTGCTGGATAACTTCGAG
LOC_Os01g32364
Os.35044.2.S1_x_at--739--6991Chr01:18091461..18091485 (25 bp)
GTACGTGGATTTCAGGACCCTCAGG
LOC_Os01g32364
Target Sequence 
AAGTTCACGGCCGATGAGGTCCACATGGTGAAGGGATCAATCGACTATGTTGGCATTAATCAGTATACTGCTTATTATGT
CCGTGATCAGCAGCCGAACGCCACGACTCTCCCTAGTTACTCGTCTGACTGGCATGCTGCACCTATTTATGAACGCGATG
GCGTGCCAATTGGACCAAGGGCGAATTCTGACTGGCTTTACATTGTACCGTGGGGTTTGTACAAAGCTGTCACCTATGTC
AAGGAGAAGTATGGTAACCCCACAATGTTTCTATCTGAAAATGGCATGGATGATCCTGGCAATGTGACCATTGCTCAGGG
GGTGCATGACACCACGAGGGTCGCCTACTACAGGAGCTACATCACCAAGCTGAAGGAGGCGATCGACGACGGCGCCAACT
GCATAGGCTACTTCGCCTGGTCCCTGCTGGATAACTTCGAGTGGAAACTCGGGTACACGTCGAGGTTCGGCCTGGTGTAC
GTGGATTTCAGGACCCTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35044.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis