Browse Element(s) Details


Os.35111.1.S1_at

Description gb:AK068934.1
DB_XREF= gi:32978958
TID=Os.35111.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35111 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1041F02.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003E11, full insert sequence.
FL= gb:AK068934.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1566011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15610Os.28943.1.S1_x_at1/113+8590513..8593695retrotransposon protein, putative, unclassified
LOC_Os03g15620NANA3+8594681..8600509retrotransposon protein, putative, unclassified
LOC_Os03g15630Os.11264.1.S1_at11/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed
LOC_Os03g15630OsAffx.22457.1.S1_x_at1/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed
LOC_Os03g15640OsAffx.12876.1.S1_at11/113+8606970..8607277hypothetical protein
LOC_Os03g15650Os.15443.1.S1_x_at11/113+8608814..8614218Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g15660Os.35111.1.S1_at11/113+8615018..8616152AP2 domain containing protein, expressed
LOC_Os03g15670OsAffx.12877.1.S1_at11/113+8620865..8621704hypothetical protein
LOC_Os03g15680OsAffx.25100.1.S1_x_at11/113+8630550..8632277GRAS family transcription factor containing protein
LOC_Os03g15680OsAffx.25100.1.S1_at11/113+8630550..8632277GRAS family transcription factor containing protein
LOC_Os03g15690Os.50849.1.S1_at11/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_x_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15700Os.5848.2.S1_x_at11/113+8639284..8642074Splicing factor 3A subunit 2, putative, expressed
LOC_Os03g15700Os.5848.1.S1_at7/113+8639284..8642074Splicing factor 3A subunit 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35111.1.S1_at--691--7371Chr03:8615520..8615544 (25 bp)
GTGACGTGCTGGACCACGCGACGAC
LOC_Os03g15660
Os.35111.1.S1_at--495--4011Chr03:8615406..8615430 (25 bp)
CGTCGCCGAAGTTCATGGATCTAAT
LOC_Os03g15660
Os.35111.1.S1_at--70--1231Chr03:8615397..8615421 (25 bp)
AGTTCATGGATCTAATGGCCGCCGG
LOC_Os03g15660
Os.35111.1.S1_at--315--711Chr03:8615320..8615344 (25 bp)
ATGAGGCTGTGGAGCTTCTGCTAGC
LOC_Os03g15660
Os.35111.1.S1_at--1093--4851Chr03:8615292..8615316 (25 bp)
GCTAGGAGCCTAGGAAATCGATCGT
LOC_Os03g15660
Os.35111.1.S1_at--977--2271Chr03:8615278..8615302 (25 bp)
AAATCGATCGTGAATCCATTCGCCC
LOC_Os03g15660
Os.35111.1.S1_at--472--91Chr03:8615261..8615285 (25 bp)
ATTCGCCCATGCAACACAATACTAC
LOC_Os03g15660
Os.35111.1.S1_at--1154--10771Chr03:8615234..8615258 (25 bp)
TTGATCCAATCAATTTCTCCTCTCT
LOC_Os03g15660
Os.35111.1.S1_at--617--10311Chr03:8615221..8615245 (25 bp)
TTTCTCCTCTCTTTGAGCATCGAAA
LOC_Os03g15660
Os.35111.1.S1_at--1088--3131Chr03:8615188..8615212 (25 bp)
AATTAGGCCTTGGTCCATGGCTTCA
LOC_Os03g15660
Os.35111.1.S1_at--225--9911Chr03:8615086..8615110 (25 bp)
TACGGTGTTACACTGTACGGGTTGT
LOC_Os03g15660
Target Sequence 
GTGACGTGCTGGACCACGCGACGACGCCGTCGTCGTCGTCGTCTGCCGCGGCCAACGTTTGCTCGCCGCCGCTGGAGGGG
GACCATGAGCTGTGGACGGAGCTGGACGCGTTCGCGTCGCCGAAGTTCATGGATCTAATGGCCGCCGGCGGCACGGCGTT
CTCGTCGCCGTGGGAGGAGCCCGAGGAGGACGGCGAGCTGATGAGGCTGTGGAGCTTCTGCTAGCTTAGCTAGGAGCCTA
GGAAATCGATCGTGAATCCATTCGCCCATGCAACACAATACTACCATTGATCCAATCAATTTCTCCTCTCTTTGAGCATC
GAAAGCTAGGTTAATTAGGCCTTGGTCCATGGCTTCAGTTCTTCCATAGATTCTTCTTCTTTTCTTTGATAATATCTTGA
TTAATTAATATGGTTGTAATTTATATAAGTATTTTACGGTGTTACACTGTACGGGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis