Browse Element(s) Details


Os.35123.1.S1_at

Description gb:AK061371.1
DB_XREF= gi:32971389
TID=Os.35123.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peroxidase (B1135C02.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-304-E09, full insert sequence.
FL= gb:AK061371.1 gb:AK068894.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2223011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22190OsAffx.9860.1.S1_x_at1/111+12456734..12464956transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g22200Os.14491.2.S1_x_at4/111+12465562..12468020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g22200Os.47463.1.S1_x_at3/111+12465562..12468020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g22200Os.41934.1.A1_x_at2/111+12465562..12468020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g22209OsAffx.23333.1.S1_at11/111+12470043..12472887hypothetical protein
LOC_Os01g22209OsAffx.23333.2.S1_x_at10/111+12470043..12472887hypothetical protein
LOC_Os01g22220OsAffx.23332.2.A1_at11/111+12474474..12477137hypothetical protein
LOC_Os01g22220OsAffx.25889.2.S1_at10/111+12474474..12477137hypothetical protein
LOC_Os01g22220OsAffx.1923.1.S1_at1/111+12474474..12477137hypothetical protein
LOC_Os01g22230Os.35123.1.S1_at11/111+12482404..12486690Peroxidase family protein, expressed
LOC_Os01g22230Os.1559.1.S1_x_at2/111+12482404..12486690Peroxidase family protein, expressed
LOC_Os01g22249Os.17722.1.S1_at11/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.51434.1.S1_at11/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.38751.1.A1_at4/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.22240.1.S1_x_at3/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.22240.1.S1_at2/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.1559.1.S1_x_at2/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.9790.1.S1_x_at2/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.1197.1.S1_x_at1/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.49802.1.S2_at1/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.916.1.S1_x_at1/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22270Os.46012.2.S1_x_at8/111+12503513..12509276retrotransposon protein, putative, unclassified
LOC_Os01g22270Os.27088.1.A1_x_at5/111+12503513..12509276retrotransposon protein, putative, unclassified
LOC_Os01g22270Os.46012.3.S1_x_at4/111+12503513..12509276retrotransposon protein, putative, unclassified
LOC_Os01g22280NANA1+12511354..12513402retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0009624biological_processresponse to nematode
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35123.1.S1_at--242--3971Chr01:12486324..12486348 (25 bp)
CGGTGCGGCCAGATCAGGGTCAACT
LOC_Os01g22230
Os.35123.1.S1_at--456--4391Chr01:12486446..12486470 (25 bp)
CCAATCTAATCATGCATGTCGGCCG
LOC_Os01g22230
Os.35123.1.S1_at--280--9451Chr01:12486464..12486488 (25 bp)
TCGGCCGTTGGATGCGAGTGATTTC
LOC_Os01g22230
Os.35123.1.S1_at--823--4611Chr01:12486477..12486501 (25 bp)
GCGAGTGATTTCCTTTAATTTCCTT
LOC_Os01g22230
Os.35123.1.S1_at--165--10271Chr01:12486526..12486550 (25 bp)
TTTGCGTGTACTAGTGTCGTCGTGT
LOC_Os01g22230
Os.35123.1.S1_at--119--7211Chr01:12486541..12486565 (25 bp)
GTCGTCGTGTCGTGTCGATCGATCT
LOC_Os01g22230
Os.35123.1.S1_at--382--9391Chr01:12486555..12486579 (25 bp)
TCGATCGATCTTTCGTACGTGCATT
LOC_Os01g22230
Os.35123.1.S1_at--486--10311Chr01:12486565..12486589 (25 bp)
TTTCGTACGTGCATTTGCTCTTGGA
LOC_Os01g22230
Os.35123.1.S1_at--444--2991Chr01:12486589..12486613 (25 bp)
AATGTTTTAGGTCGGATTCCAGTGA
LOC_Os01g22230
Os.35123.1.S1_at--907--1871Chr01:12486639..12486663 (25 bp)
ACGTACCATGTGTGTTTTATTAATC
LOC_Os01g22230
Os.35123.1.S1_at--42--7331Chr01:12486664..12486688 (25 bp)
GTGCTACTAATATATTCGCTACTCC
LOC_Os01g22230
Target Sequence 
CGGTGCGGCCAGATCAGGGTCAACTGCAACGTCGTCAACCCGTCGACCTCCTCGCCGGAGGTCGAGCTGGCCGGCGAGGA
TCAGGAGACCGGAGGCGCCGTCGCGGCAAGCTAGCTAGCTAACCAATCTAATCATGCATGTCGGCCGTTGGATGCGAGTG
ATTTCCTTTAATTTCCTTTTTTTGACGTGCACGAACATTTAATTTGCGTGTACTAGTGTCGTCGTGTCGTGTCGATCGAT
CTTTCGTACGTGCATTTGCTCTTGGAATGTTTTAGGTCGGATTCCAGTGATGAAGAATAAGTACTACGTATGTACACGTA
CCATGTGTGTTTTATTAATCGTGCTACTAATATATTCGCTACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis