Browse Element(s) Details


Os.35224.1.A1_x_at

Description gb:AK068449.1
DB_XREF= gi:32978467
TID=Os.35224.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35224 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153B14, full insert sequence.
FL= gb:AK068449.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2518010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25130Os.55445.1.S1_at11/1112+14430672..14431393expressed protein
LOC_Os12g25140OsAffx.19816.1.S1_at11/1112+14432825..14433163hypothetical protein
LOC_Os12g25150NANA12+14435735..14437452retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g25160OsAffx.19817.3.S1_at11/1112+14445153..14445686MATE efflux family protein, putative
LOC_Os12g25160OsAffx.19817.1.S1_x_at1/1112+14445153..14445686MATE efflux family protein, putative
LOC_Os12g25170Os.22842.1.S1_at11/1112+14447241..14448994NB-ARC domain containing protein, expressed
LOC_Os12g25180Os.8468.1.S1_at11/1112+14450578..14454081expressed protein
LOC_Os12g25180Os.8468.1.S1_s_at11/1112+14450578..14454081expressed protein
LOC_Os12g25180Os.35224.1.A1_x_at10/1112+14450578..14454081expressed protein
LOC_Os12g25180OsAffx.19818.1.S1_at1/1112+14450578..14454081expressed protein
LOC_Os12g25190Os.27639.1.S1_x_at5/1112+14469211..14474666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25190OsAffx.8980.1.S1_at3/1112+14469211..14474666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25190Os.53731.1.S1_at1/1112+14469211..14474666retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35224.1.A1_x_at--1073--8231Chr12:14453225..14453249 (25 bp)
GGCACCCCTGCAAGATCATTCAGAA
LOC_Os12g25180
Os.35224.1.A1_x_at--1077--10511Chr12:14453243..14453267 (25 bp)
TTCAGAACGAACTCCAGCAACCATG
LOC_Os12g25180
Os.35224.1.A1_x_at--554--6471Chr12:14453269..14453293 (25 bp)
GATACAACCTGAACCTCGCAAGCTG
LOC_Os12g25180
Os.35224.1.A1_x_at--853--3331Chr12:14453298..14453322 (25 bp)
CACTGGGTGCCATCCTGAAGGCCGA
LOC_Os12g25180
Os.35224.1.A1_x_at--798--2571Chr12:14453489..14453513 (25 bp)
AACGGCGAGCAGTGGAGCCATTGCT
LOC_Os12g25180
Os.35224.1.A1_x_at--618--9411Chr12:14453526..14453550 (25 bp)
TCGTCCCGCGTACCAGTGTGAGCTA
LOC_Os12g25180
Os.35224.1.A1_x_at--45--5031Chr12:14453648..14453672 (25 bp)
GCAGTGTCTCAGAGAGAGTCCACCT
LOC_Os12g25180
Os.35224.1.A1_x_at--322--6111Chr12:14453663..14453687 (25 bp)
GAGTCCACCTGCTTGTGTATTGTAA
LOC_Os12g25180
Os.35224.1.A1_x_at--913--9831Chr12:14453700..14453724 (25 bp)
TACAACGACGTTAATTAGCCGCCCA
LOC_Os12g25180
Os.35224.1.A1_x_at--939--10451Chr12:14453714..14453738 (25 bp)
TTAGCCGCCCAAATCAAATGTATAT
LOC_Os12g25180
Os.35224.1.A1_x_at--365--5551NONE
GAAAGACCACCTCCTTGGGTGCGAT
NONE
Target Sequence 
GGCACCCCTGCAAGATCATTCAGAACGAACTCCAGCAACCATGCGATACAACCTGAACCTCGCAAGCTGCCCACACTGGG
TGCCATCCTGAAGGCCGAGCCGCTGAGGCCGCCACCACCACCGCAGGAGACGCAGCCAACGCCGCCGTCGCCGGCGACGA
CAATGCGACTCGCCGACCTCCTCCGGGAGAGGCAAGAATCGTTCACCTGNTACGACGGCCCTGCNTGCGCCATCTCCCGG
ACGGGCTCCTCCTGCGGCGCCGGCAACGGCGAGCAGTGGAGCCATTGCTGCATTCCGAGCTTCGTCCCGCGTACCAGTGT
GAGCTACGCGAAGGGGAGGAGGAAGCGCAGGTGAAGAAGCGATCGATCGAGAGAGTGTGCAAAGAAATCAAGTGGTTTTT
GGGATGATAATTGTTCAGAATGTGCAGTGTCTCAGAGAGAGTCCACCTGCTTGTGTATTGTAACAACAACTACAGTACAA
CGACGTTAATTAGCCGCCCAAATCAAATGTATATATGTGATGTGACAGNGAGATACCTACCAAAATACTCCAAATAGGAA
AGACCACCTCCTTGGGTGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35224.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis