Browse Element(s) Details


Os.3560.1.S1_at

Description gb:AF326768.1
DB_XREF= gi:15430698
TID=Os.3560.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3560 (NCBI UniGene Cluster)
DEF=Oryza sativa embryonic flower 1-like protein mRNA, complete cds.
PROD=embryonic flower 1-like protein
FL= gb:AF326768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1289011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12880Os.3558.1.S1_at11/111+7125951..7134131VHS domain containing protein, expressed
LOC_Os01g12880Os.3558.2.S1_x_at10/111+7125951..7134131VHS domain containing protein, expressed
LOC_Os01g12890Os.3560.1.S1_at11/111+7154582..7161187expressed protein
LOC_Os01g12890Os.3560.2.S1_x_at11/111+7154582..7161187expressed protein
LOC_Os01g12890Os.3560.1.S1_a_at11/111+7154582..7161187expressed protein
LOC_Os01g12900Os.12209.1.S1_a_at11/111+7161399..7164204RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os01g12910Os.3561.1.S1_at11/111+7170420..7172573thioesterase family protein, expressed
LOC_Os01g12920Os.49482.1.S1_at11/111+7172909..7173868thioesterase family protein, expressed
LOC_Os01g12930OsAffx.22082.1.S1_x_at10/111+7174157..7180765U-box domain containing protein, expressed
LOC_Os01g12940OsAffx.23221.1.S1_s_at11/111+7182285..7184840Phosphorylase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3560.1.S1_at--371--2311Chr01:7160628..7160652 (25 bp)
AAAGTGGTGTGCATAATTCCTGAAC
LOC_Os01g12890
Os.3560.1.S1_at--722--331Chr01:7160663..7160687 (25 bp)
ATACATTTCATCTTTATGGCGCCAA
LOC_Os01g12890
Os.3560.1.S1_at--304--9131Chr01:7160714..7160753 (25 bp)
TGCTGGATCTGCTGTAAGGCTTCTT
LOC_Os01g12890
Os.3560.1.S1_at--713--10551Chr01:7160818..7160842 (25 bp)
TTCTTGTAAGTTGTGGATGCCCCAT
LOC_Os01g12890
Os.3560.1.S1_at--192--8011Chr01:7160848..7160872 (25 bp)
GGATGGGAACCTGCCAGACAGTGAA
LOC_Os01g12890
Os.3560.1.S1_at--689--2891Chr01:7160885..7160909 (25 bp)
AAGGTGCAGCATCCGGTTTTTGTTT
LOC_Os01g12890
Os.3560.1.S1_at--767--10371Chr01:7160907..7160931 (25 bp)
TTTTGCCAGTCCAAGAAACGTCCTC
LOC_Os01g12890
Os.3560.1.S1_at--1065--5311Chr01:7160921..7160945 (25 bp)
GAAACGTCCTCCTGTTACTTTGTAG
LOC_Os01g12890
Os.3560.1.S1_at--1130--6631Chr01:7160945..7160969 (25 bp)
GTTGTACTCATACTAGTGCGCTTGT
LOC_Os01g12890
Os.3560.1.S1_at--241--5711Chr01:7161106..7161130 (25 bp)
GACTAGCTCTCGTTATCAATGTGTT
LOC_Os01g12890
Os.3560.1.S1_at--805--6591Chr01:7161142..7161166 (25 bp)
GATTGATGTGTTACCTTACTCTTGA
LOC_Os01g12890
Target Sequence 
AAAGTGGTGTGCATAATTCCTGAACATTTACAATCATACATTTCATCTTTATGGCGCCAAATAGTCATACTGTAAGAGGA
GGGCTTTGCTGGATCTGCTGTAAGGCTTCTTGTAAGTTGTGGATGCCCCATTTTCTGGATGGGAACCTGCCAGACAGTGA
ACAAGGGCTTTGCAAGGTGCAGCATCCGGTTTTTGTTTTGCCAGTCCAAGAAACGTCCTCCTGTTACTTTGTAGTTGTAC
TCATACTAGTGCGCTTGTTTGTACAAGGAGAAATGTGTAACCTTGTTGAAAAAAATGTCTCCCCCATTTTGTAATTACCA
TAAGGAGGTTTATAGTGTTGTGAGCTGTGTGTGACTGACGGCGAGAAATGGTTTTGTCGGTGTTAAGGTTGAAACGACTA
GCTCTCGTTATCAATGTGTTGTAAACTTCTAGATTGATGTGTTACCTTACTCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis